This is an extremely minimal client. You need to know the API to be able to use this client. All this function does is:
Try to substitute each listed parameter into endpoint, using the
{parameter} notation.
If a GET request (the default), then add all other listed parameters as query parameters.
If not a GET request, then send the other parameters in the request body, as JSON.
Convert the response to an R list using jsonlite::fromJSON().
gh( endpoint, ..., per_page = NULL, .token = NULL, .destfile = NULL, .overwrite = FALSE, .api_url = NULL, .method = "GET", .limit = NULL, .accept = "application/vnd.github.v3+json", .send_headers = NULL, .progress = TRUE, .params = list() )
| endpoint | GitHub API endpoint. Must be one of the following forms:
If the method is not supplied, will use |
|---|---|
| ... | Name-value pairs giving API parameters. Will be matched into
|
| per_page | Number of items to return per page. If omitted,
will be substituted by |
| .token | Authentication token. Defaults to |
| .destfile | Path to write response to disk. If |
| .overwrite | If |
| .api_url | Github API url (default: https://api.github.com). Used
if |
| .method | HTTP method to use if not explicitly supplied in the
|
| .limit | Number of records to return. This can be used
instead of manual pagination. By default it is |
| .accept | The value of the |
| .send_headers | Named character vector of header field values
(except |
| .progress | Whether to show a progress indicator for calls that need more than one HTTP request. |
| .params | Additional list of parameters to append to |
Answer from the API as a gh_response object, which is also a
list. Failed requests will generate an R error. Requests that
generate a raw response will return a raw vector.
gh_gql() if you want to use the GitHub GraphQL API,
gh_whoami() for details on GitHub API token management.
## Repositories of a user, these are equivalent gh("/users/hadley/repos")#> [ #> { #> "id": 40423928, #> "node_id": "MDEwOlJlcG9zaXRvcnk0MDQyMzkyOA==", #> "name": "15-state-of-the-union", #> "full_name": "hadley/15-state-of-the-union", #> "private": false, #> "owner": { #> "login": "hadley", #> "id": 4196, #> "node_id": "MDQ6VXNlcjQxOTY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/4196?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/hadley", #> "html_url": "https://github.com/hadley", #> "followers_url": "https://api.github.com/users/hadley/followers", #> "following_url": "https://api.github.com/users/hadley/following{/other_user}", #> "gists_url": "https://api.github.com/users/hadley/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/hadley/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/hadley/subscriptions", #> "organizations_url": "https://api.github.com/users/hadley/orgs", #> "repos_url": "https://api.github.com/users/hadley/repos", #> "events_url": "https://api.github.com/users/hadley/events{/privacy}", #> "received_events_url": "https://api.github.com/users/hadley/received_events", #> "type": "User", #> "site_admin": false #> }, #> "html_url": "https://github.com/hadley/15-state-of-the-union", #> "description": {}, #> "fork": false, #> "url": "https://api.github.com/repos/hadley/15-state-of-the-union", #> "forks_url": "https://api.github.com/repos/hadley/15-state-of-the-union/forks", #> "keys_url": "https://api.github.com/repos/hadley/15-state-of-the-union/keys{/key_id}", #> "collaborators_url": "https://api.github.com/repos/hadley/15-state-of-the-union/collaborators{/collaborator}", #> "teams_url": "https://api.github.com/repos/hadley/15-state-of-the-union/teams", #> "hooks_url": "https://api.github.com/repos/hadley/15-state-of-the-union/hooks", #> "issue_events_url": "https://api.github.com/repos/hadley/15-state-of-the-union/issues/events{/number}", #> "events_url": "https://api.github.com/repos/hadley/15-state-of-the-union/events", #> "assignees_url": "https://api.github.com/repos/hadley/15-state-of-the-union/assignees{/user}", #> "branches_url": "https://api.github.com/repos/hadley/15-state-of-the-union/branches{/branch}", #> "tags_url": "https://api.github.com/repos/hadley/15-state-of-the-union/tags", #> "blobs_url": "https://api.github.com/repos/hadley/15-state-of-the-union/git/blobs{/sha}", #> "git_tags_url": "https://api.github.com/repos/hadley/15-state-of-the-union/git/tags{/sha}", #> "git_refs_url": "https://api.github.com/repos/hadley/15-state-of-the-union/git/refs{/sha}", #> "trees_url": "https://api.github.com/repos/hadley/15-state-of-the-union/git/trees{/sha}", #> "statuses_url": "https://api.github.com/repos/hadley/15-state-of-the-union/statuses/{sha}", #> "languages_url": "https://api.github.com/repos/hadley/15-state-of-the-union/languages", #> "stargazers_url": "https://api.github.com/repos/hadley/15-state-of-the-union/stargazers", #> "contributors_url": "https://api.github.com/repos/hadley/15-state-of-the-union/contributors", #> "subscribers_url": "https://api.github.com/repos/hadley/15-state-of-the-union/subscribers", #> "subscription_url": "https://api.github.com/repos/hadley/15-state-of-the-union/subscription", #> "commits_url": "https://api.github.com/repos/hadley/15-state-of-the-union/commits{/sha}", #> "git_commits_url": "https://api.github.com/repos/hadley/15-state-of-the-union/git/commits{/sha}", #> "comments_url": "https://api.github.com/repos/hadley/15-state-of-the-union/comments{/number}", #> "issue_comment_url": "https://api.github.com/repos/hadley/15-state-of-the-union/issues/comments{/number}", #> "contents_url": "https://api.github.com/repos/hadley/15-state-of-the-union/contents/{+path}", #> "compare_url": "https://api.github.com/repos/hadley/15-state-of-the-union/compare/{base}...{head}", #> "merges_url": "https://api.github.com/repos/hadley/15-state-of-the-union/merges", #> "archive_url": "https://api.github.com/repos/hadley/15-state-of-the-union/{archive_format}{/ref}", #> "downloads_url": "https://api.github.com/repos/hadley/15-state-of-the-union/downloads", #> "issues_url": "https://api.github.com/repos/hadley/15-state-of-the-union/issues{/number}", #> "pulls_url": "https://api.github.com/repos/hadley/15-state-of-the-union/pulls{/number}", #> "milestones_url": "https://api.github.com/repos/hadley/15-state-of-the-union/milestones{/number}", #> "notifications_url": "https://api.github.com/repos/hadley/15-state-of-the-union/notifications{?since,all,participating}", #> "labels_url": "https://api.github.com/repos/hadley/15-state-of-the-union/labels{/name}", #> "releases_url": "https://api.github.com/repos/hadley/15-state-of-the-union/releases{/id}", #> "deployments_url": "https://api.github.com/repos/hadley/15-state-of-the-union/deployments", #> "created_at": "2015-08-09T03:22:26Z", #> "updated_at": "2019-08-18T16:49:32Z", #> "pushed_at": "2015-08-10T20:29:10Z", #> "git_url": "git://github.com/hadley/15-state-of-the-union.git", #> "ssh_url": "git@github.com:hadley/15-state-of-the-union.git", #> "clone_url": "https://github.com/hadley/15-state-of-the-union.git", #> "svn_url": "https://github.com/hadley/15-state-of-the-union", #> "homepage": {}, #> "size": 4519, #> "stargazers_count": 23, #> "watchers_count": 23, #> "language": "R", #> "has_issues": true, #> "has_projects": true, #> "has_downloads": true, #> "has_wiki": true, #> "has_pages": false, #> "forks_count": 7, #> "mirror_url": {}, #> "archived": false, #> "disabled": false, #> "open_issues_count": 0, #> "license": {}, #> "forks": 7, #> "open_issues": 0, #> "watchers": 23, #> "default_branch": "master" #> }, #> { #> "id": 40544418, #> "node_id": "MDEwOlJlcG9zaXRvcnk0MDU0NDQxOA==", #> "name": "15-student-papers", #> "full_name": "hadley/15-student-papers", #> "private": false, #> "owner": { #> "login": "hadley", #> "id": 4196, #> "node_id": "MDQ6VXNlcjQxOTY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/4196?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/hadley", #> "html_url": "https://github.com/hadley", #> "followers_url": "https://api.github.com/users/hadley/followers", #> "following_url": "https://api.github.com/users/hadley/following{/other_user}", #> "gists_url": "https://api.github.com/users/hadley/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/hadley/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/hadley/subscriptions", #> "organizations_url": "https://api.github.com/users/hadley/orgs", #> "repos_url": "https://api.github.com/users/hadley/repos", #> "events_url": "https://api.github.com/users/hadley/events{/privacy}", #> "received_events_url": "https://api.github.com/users/hadley/received_events", #> "type": "User", #> "site_admin": false #> }, #> "html_url": "https://github.com/hadley/15-student-papers", #> "description": "Graphics & computing student paper winners @ JSM 2015", #> "fork": false, #> "url": "https://api.github.com/repos/hadley/15-student-papers", #> "forks_url": "https://api.github.com/repos/hadley/15-student-papers/forks", #> "keys_url": "https://api.github.com/repos/hadley/15-student-papers/keys{/key_id}", #> "collaborators_url": "https://api.github.com/repos/hadley/15-student-papers/collaborators{/collaborator}", #> "teams_url": "https://api.github.com/repos/hadley/15-student-papers/teams", #> "hooks_url": "https://api.github.com/repos/hadley/15-student-papers/hooks", #> "issue_events_url": "https://api.github.com/repos/hadley/15-student-papers/issues/events{/number}", #> "events_url": "https://api.github.com/repos/hadley/15-student-papers/events", #> "assignees_url": "https://api.github.com/repos/hadley/15-student-papers/assignees{/user}", #> "branches_url": "https://api.github.com/repos/hadley/15-student-papers/branches{/branch}", #> "tags_url": "https://api.github.com/repos/hadley/15-student-papers/tags", #> "blobs_url": "https://api.github.com/repos/hadley/15-student-papers/git/blobs{/sha}", #> "git_tags_url": "https://api.github.com/repos/hadley/15-student-papers/git/tags{/sha}", #> "git_refs_url": "https://api.github.com/repos/hadley/15-student-papers/git/refs{/sha}", #> "trees_url": "https://api.github.com/repos/hadley/15-student-papers/git/trees{/sha}", #> "statuses_url": "https://api.github.com/repos/hadley/15-student-papers/statuses/{sha}", #> "languages_url": "https://api.github.com/repos/hadley/15-student-papers/languages", #> "stargazers_url": "https://api.github.com/repos/hadley/15-student-papers/stargazers", #> "contributors_url": "https://api.github.com/repos/hadley/15-student-papers/contributors", #> "subscribers_url": "https://api.github.com/repos/hadley/15-student-papers/subscribers", #> "subscription_url": "https://api.github.com/repos/hadley/15-student-papers/subscription", #> "commits_url": "https://api.github.com/repos/hadley/15-student-papers/commits{/sha}", #> "git_commits_url": "https://api.github.com/repos/hadley/15-student-papers/git/commits{/sha}", #> "comments_url": "https://api.github.com/repos/hadley/15-student-papers/comments{/number}", #> "issue_comment_url": "https://api.github.com/repos/hadley/15-student-papers/issues/comments{/number}", #> "contents_url": "https://api.github.com/repos/hadley/15-student-papers/contents/{+path}", #> "compare_url": "https://api.github.com/repos/hadley/15-student-papers/compare/{base}...{head}", #> "merges_url": "https://api.github.com/repos/hadley/15-student-papers/merges", #> "archive_url": "https://api.github.com/repos/hadley/15-student-papers/{archive_format}{/ref}", #> "downloads_url": "https://api.github.com/repos/hadley/15-student-papers/downloads", #> "issues_url": "https://api.github.com/repos/hadley/15-student-papers/issues{/number}", #> "pulls_url": "https://api.github.com/repos/hadley/15-student-papers/pulls{/number}", #> "milestones_url": "https://api.github.com/repos/hadley/15-student-papers/milestones{/number}", #> "notifications_url": "https://api.github.com/repos/hadley/15-student-papers/notifications{?since,all,participating}", #> "labels_url": "https://api.github.com/repos/hadley/15-student-papers/labels{/name}", #> "releases_url": "https://api.github.com/repos/hadley/15-student-papers/releases{/id}", #> "deployments_url": "https://api.github.com/repos/hadley/15-student-papers/deployments", #> "created_at": "2015-08-11T13:51:29Z", #> "updated_at": "2019-08-18T16:49:40Z", #> "pushed_at": "2015-08-21T15:27:51Z", #> "git_url": "git://github.com/hadley/15-student-papers.git", #> "ssh_url": "git@github.com:hadley/15-student-papers.git", #> "clone_url": "https://github.com/hadley/15-student-papers.git", #> "svn_url": "https://github.com/hadley/15-student-papers", #> "homepage": {}, #> "size": 2956, #> "stargazers_count": 14, #> "watchers_count": 14, #> "language": "R", #> "has_issues": true, #> "has_projects": true, #> "has_downloads": true, #> "has_wiki": true, #> "has_pages": false, #> "forks_count": 0, #> "mirror_url": {}, #> "archived": false, #> "disabled": false, #> "open_issues_count": 0, #> "license": {}, #> "forks": 0, #> "open_issues": 0, #> "watchers": 14, #> "default_branch": "master" #> }, #> { #> "id": 14984909, #> "node_id": "MDEwOlJlcG9zaXRvcnkxNDk4NDkwOQ==", #> "name": "500lines", #> "full_name": "hadley/500lines", #> "private": false, #> "owner": { #> "login": "hadley", #> "id": 4196, #> "node_id": "MDQ6VXNlcjQxOTY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/4196?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/hadley", #> "html_url": "https://github.com/hadley", #> "followers_url": "https://api.github.com/users/hadley/followers", #> "following_url": "https://api.github.com/users/hadley/following{/other_user}", #> "gists_url": "https://api.github.com/users/hadley/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/hadley/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/hadley/subscriptions", #> "organizations_url": "https://api.github.com/users/hadley/orgs", #> "repos_url": "https://api.github.com/users/hadley/repos", #> "events_url": "https://api.github.com/users/hadley/events{/privacy}", #> "received_events_url": "https://api.github.com/users/hadley/received_events", #> "type": "User", #> "site_admin": false #> }, #> "html_url": "https://github.com/hadley/500lines", #> "description": "500 Lines or Less", #> "fork": true, #> "url": "https://api.github.com/repos/hadley/500lines", #> "forks_url": "https://api.github.com/repos/hadley/500lines/forks", #> "keys_url": "https://api.github.com/repos/hadley/500lines/keys{/key_id}", #> "collaborators_url": "https://api.github.com/repos/hadley/500lines/collaborators{/collaborator}", #> "teams_url": "https://api.github.com/repos/hadley/500lines/teams", #> "hooks_url": "https://api.github.com/repos/hadley/500lines/hooks", #> "issue_events_url": "https://api.github.com/repos/hadley/500lines/issues/events{/number}", #> "events_url": "https://api.github.com/repos/hadley/500lines/events", #> "assignees_url": "https://api.github.com/repos/hadley/500lines/assignees{/user}", #> "branches_url": "https://api.github.com/repos/hadley/500lines/branches{/branch}", #> "tags_url": "https://api.github.com/repos/hadley/500lines/tags", #> "blobs_url": "https://api.github.com/repos/hadley/500lines/git/blobs{/sha}", #> "git_tags_url": "https://api.github.com/repos/hadley/500lines/git/tags{/sha}", #> "git_refs_url": "https://api.github.com/repos/hadley/500lines/git/refs{/sha}", #> "trees_url": "https://api.github.com/repos/hadley/500lines/git/trees{/sha}", #> "statuses_url": "https://api.github.com/repos/hadley/500lines/statuses/{sha}", #> "languages_url": "https://api.github.com/repos/hadley/500lines/languages", #> "stargazers_url": "https://api.github.com/repos/hadley/500lines/stargazers", #> "contributors_url": "https://api.github.com/repos/hadley/500lines/contributors", #> "subscribers_url": "https://api.github.com/repos/hadley/500lines/subscribers", #> "subscription_url": "https://api.github.com/repos/hadley/500lines/subscription", #> "commits_url": "https://api.github.com/repos/hadley/500lines/commits{/sha}", #> "git_commits_url": "https://api.github.com/repos/hadley/500lines/git/commits{/sha}", #> "comments_url": "https://api.github.com/repos/hadley/500lines/comments{/number}", #> "issue_comment_url": "https://api.github.com/repos/hadley/500lines/issues/comments{/number}", #> "contents_url": "https://api.github.com/repos/hadley/500lines/contents/{+path}", #> "compare_url": "https://api.github.com/repos/hadley/500lines/compare/{base}...{head}", #> "merges_url": "https://api.github.com/repos/hadley/500lines/merges", #> "archive_url": "https://api.github.com/repos/hadley/500lines/{archive_format}{/ref}", #> "downloads_url": "https://api.github.com/repos/hadley/500lines/downloads", #> "issues_url": "https://api.github.com/repos/hadley/500lines/issues{/number}", #> "pulls_url": "https://api.github.com/repos/hadley/500lines/pulls{/number}", #> "milestones_url": "https://api.github.com/repos/hadley/500lines/milestones{/number}", #> "notifications_url": "https://api.github.com/repos/hadley/500lines/notifications{?since,all,participating}", #> "labels_url": "https://api.github.com/repos/hadley/500lines/labels{/name}", #> "releases_url": "https://api.github.com/repos/hadley/500lines/releases{/id}", #> "deployments_url": "https://api.github.com/repos/hadley/500lines/deployments", #> "created_at": "2013-12-06T14:35:23Z", #> "updated_at": "2014-04-29T13:52:08Z", #> "pushed_at": "2013-12-06T01:16:37Z", #> "git_url": "git://github.com/hadley/500lines.git", #> "ssh_url": "git@github.com:hadley/500lines.git", #> "clone_url": "https://github.com/hadley/500lines.git", #> "svn_url": 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"url": "https://api.github.com/repos/tidyverse/dplyr/pulls/5886", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5886", #> "diff_url": "https://github.com/tidyverse/dplyr/pull/5886.diff", #> "patch_url": "https://github.com/tidyverse/dplyr/pull/5886.patch" #> }, #> "body": "closes #5881\r\n\r\n``` r\r\n# pak::pak(\"msberends/AMR@v1.6.0\")\r\nlibrary(AMR)\r\nlibrary(skimr)\r\n\r\nskim(example_isolates)\r\n```\r\n\r\n| | |\r\n| :----------------------------------------------- | :---------------- |\r\n| Name | example\\_isolates |\r\n| Number of rows | 2000 |\r\n| Number of columns | 49 |\r\n| \\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_ | |\r\n| Column type frequency: | |\r\n| character | 2 |\r\n| Date | 1 |\r\n| factor | 1 |\r\n| logical | 3 |\r\n| mo | 1 |\r\n| numeric | 1 |\r\n| rsi | 40 |\r\n| \\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_ | |\r\n| Group variables | None |\r\n\r\nData summary\r\n\r\n**Variable type: character**\r\n\r\n| skim\\_variable | n\\_missing | complete\\_rate | min | max | empty | n\\_unique | whitespace |\r\n| :------------- | ---------: | -------------: | --: | --: | ----: | --------: | ---------: |\r\n| gender | 0 | 1 | 1 | 1 | 0 | 2 | 0 |\r\n| patient\\_id | 0 | 1 | 6 | 6 | 0 | 981 | 0 |\r\n\r\n**Variable type: Date**\r\n\r\n| skim\\_variable | n\\_missing | complete\\_rate | min | max | median | n\\_unique |\r\n| :------------- | ---------: | -------------: | :--------- | :--------- | :--------- | --------: |\r\n| date | 0 | 1 | 2002-01-02 | 2017-12-28 | 2009-07-31 | 1140 |\r\n\r\n**Variable type: factor**\r\n\r\n| skim\\_variable | n\\_missing | complete\\_rate | ordered | n\\_unique | top\\_counts |\r\n| :------------- | ---------: | -------------: | :------ | --------: | :----------------------------- |\r\n| hospital\\_id | 0 | 1 | FALSE | 4 | D: 762, B: 663, A: 321, C: 254 |\r\n\r\n**Variable type: logical**\r\n\r\n| skim\\_variable | n\\_missing | complete\\_rate | mean | count |\r\n| :--------------- | ---------: | -------------: | ---: | :------------------ |\r\n| ward\\_icu | 0 | 1 | 0.32 | FAL: 1354, TRU: 646 |\r\n| ward\\_clinical | 0 | 1 | 0.73 | TRU: 1464, FAL: 536 |\r\n| ward\\_outpatient | 0 | 1 | 0.06 | FAL: 1880, TRU: 120 |\r\n\r\n**Variable type: mo**\r\n\r\n| skim\\_variable | n\\_missing | complete\\_rate | unique\\_total | gram\\_negative | gram\\_positive | top\\_genus | top\\_species |\r\n| :------------- | ---------: | -------------: | ------------: | -------------: | -------------: | :------------- | :--------------- |\r\n| mo | 0 | 1 | 90 | NA | NA | Staphylococcus | Escherichia coli |\r\n\r\n**Variable type: numeric**\r\n\r\n| skim\\_variable | n\\_missing | complete\\_rate | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |\r\n| :------------- | ---------: | -------------: | ----: | ----: | -: | --: | --: | --: | ---: | :---- |\r\n| age | 0 | 1 | 71.06 | 14.12 | 14 | 63 | 74 | 82 | 97 | ▁▁▃▇▅ |\r\n\r\n**Variable type: rsi**\r\n\r\n| skim\\_variable | n\\_missing | complete\\_rate | ab\\_name | count\\_R | count\\_S | count\\_I | prop\\_R | prop\\_S | prop\\_I |\r\n| :------------- | ---------: | -------------: | :------- | -------: | -------: | -------: | ------: | ------: | ------: |\r\n| PEN | 371 | 0.81 | NA | 1201 | 428 | 11 | 0.74 | 0.26 | 0.01 |\r\n| OXA | 1635 | 0.18 | NA | 114 | 251 | 0 | 0.31 | 0.69 | 0.00 |\r\n| FLC | 1057 | 0.47 | NA | 278 | 665 | 0 | 0.29 | 0.71 | 0.00 |\r\n| AMX | 650 | 0.68 | NA | 804 | 546 | 3 | 0.60 | 0.40 | 0.00 |\r\n| AMC | 121 | 0.94 | NA | 446 | 1433 | 91 | 0.24 | 0.76 | 0.05 |\r\n| AMP | 650 | 0.68 | NA | 804 | 546 | 3 | 0.60 | 0.40 | 0.00 |\r\n| TZP | 999 | 0.50 | NA | 126 | 875 | 13 | 0.13 | 0.87 | 0.01 |\r\n| CZO | 1554 | 0.22 | NA | 199 | 247 | 2 | 0.45 | 0.55 | 0.00 |\r\n| FEP | 1276 | 0.36 | NA | 103 | 621 | 1 | 0.14 | 0.86 | 0.00 |\r\n| CXM | 211 | 0.89 | NA | 470 | 1319 | 22 | 0.26 | 0.74 | 0.01 |\r\n| FOX | 1182 | 0.41 | NA | 224 | 594 | 8 | 0.27 | 0.73 | 0.01 |\r\n| CTX | 1057 | 0.47 | NA | 146 | 797 | 1 | 0.15 | 0.85 | 0.00 |\r\n| CAZ | 189 | 0.91 | NA | 1204 | 607 | 0 | 0.66 | 0.34 | 0.00 |\r\n| CRO | 1057 | 0.47 | NA | 146 | 797 | 1 | 0.15 | 0.85 | 0.00 |\r\n| GEN | 145 | 0.93 | NA | 456 | 1399 | 27 | 0.25 | 0.75 | 0.01 |\r\n| TOB | 649 | 0.68 | NA | 465 | 886 | 7 | 0.34 | 0.66 | 0.01 |\r\n| AMK | 1308 | 0.35 | NA | 441 | 251 | 0 | 0.64 | 0.36 | 0.00 |\r\n| KAN | 1529 | 0.24 | NA | 471 | 0 | 0 | 1.00 | 0.00 | 0.00 |\r\n| TMP | 501 | 0.75 | NA | 571 | 928 | 10 | 0.38 | 0.62 | 0.01 |\r\n| SXT | 241 | 0.88 | NA | 361 | 1398 | 6 | 0.21 | 0.79 | 0.00 |\r\n| NIT | 1257 | 0.37 | NA | 127 | 616 | 51 | 0.17 | 0.83 | 0.07 |\r\n| FOS | 1649 | 0.18 | NA | 148 | 203 | 0 | 0.42 | 0.58 | 0.00 |\r\n| LNZ | 977 | 0.51 | NA | 709 | 314 | 0 | 0.69 | 0.31 | 0.00 |\r\n| CIP | 591 | 0.70 | NA | 228 | 1181 | 69 | 0.16 | 0.84 | 0.05 |\r\n| MFX | 1789 | 0.11 | NA | 71 | 140 | 4 | 0.34 | 0.66 | 0.02 |\r\n| VAN | 139 | 0.93 | NA | 712 | 1149 | 0 | 0.38 | 0.62 | 0.00 |\r\n| TEC | 1024 | 0.49 | NA | 739 | 237 | 0 | 0.76 | 0.24 | 0.00 |\r\n| TCY | 800 | 0.60 | NA | 357 | 843 | 23 | 0.30 | 0.70 | 0.02 |\r\n| TGC | 1202 | 0.40 | NA | 101 | 697 | 0 | 0.13 | 0.87 | 0.00 |\r\n| DOX | 864 | 0.57 | NA | 315 | 821 | 7 | 0.28 | 0.72 | 0.01 |\r\n| ERY | 106 | 0.95 | NA | 1084 | 810 | 9 | 0.57 | 0.43 | 0.00 |\r\n| CLI | 480 | 0.76 | NA | 930 | 590 | 4 | 0.61 | 0.39 | 0.00 |\r\n| AZM | 106 | 0.95 | NA | 1084 | 810 | 9 | 0.57 | 0.43 | 0.00 |\r\n| IPM | 1111 | 0.44 | NA | 55 | 834 | 10 | 0.06 | 0.94 | 0.01 |\r\n| MEM | 1171 | 0.41 | NA | 49 | 780 | 0 | 0.06 | 0.94 | 0.00 |\r\n| MTR | 1966 | 0.02 | NA | 5 | 29 | 0 | 0.15 | 0.85 | 0.00 |\r\n| CHL | 1846 | 0.08 | NA | 33 | 121 | 0 | 0.21 | 0.79 | 0.00 |\r\n| COL | 360 | 0.82 | NA | 1331 | 309 | 0 | 0.81 | 0.19 | 0.00 |\r\n| MUP | 1730 | 0.14 | NA | 16 | 254 | 3 | 0.06 | 0.94 | 0.01 |\r\n| RIF | 997 | 0.50 | NA | 698 | 305 | 2 | 0.70 | 0.30 | 0.00 |\r\n\r\n<sup>Created on 2021-05-17 by the [reprex 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"https://github.com/tidyverse/dplyr/pull/5885.diff", #> "patch_url": "https://github.com/tidyverse/dplyr/pull/5885.patch" #> }, #> "body": "closes #5883\r\n\r\noriginal example from #5883\r\n\r\n``` r\r\nlibrary(tidyverse)\r\n\r\nFOOBAR.df <- data.frame(matrix(rnorm(50), nrow = 10))\r\ncolnames(FOOBAR.df) <- c(\"Prevotella\", \"Streptococcus\", \"Gemella\", \"Rothia\", \"Haemophilus\")\r\nFOOBAR.df %>% \r\n rowwise() %>% \r\n transmute(sum(c_across(all_of(c(\"Prevotella\", \"Streptococcus\", \"Gemella\", \"Rothia\", \"Haemophilus\")))))\r\n#> # A tibble: 10 x 1\r\n#> # Rowwise: \r\n#> `sum(...)`\r\n#> <dbl>\r\n#> 1 0.673\r\n#> 2 3.51 \r\n#> 3 -0.463\r\n#> 4 -3.28 \r\n#> 5 -1.43 \r\n#> 6 -2.56 \r\n#> 7 -4.42 \r\n#> 8 -2.06 \r\n#> 9 0.473\r\n#> 10 0.297\r\n```\r\n\r\n<sup>Created on 2021-05-17 by the [reprex package](https://reprex.tidyverse.org) (v2.0.0)<\/sup>", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5883", #> 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"author_association": "NONE", #> "active_lock_reason": {}, #> "body": "``all_of`` or ``c_across`` function cannot help tidyselect a set of variables according to a particular set of strings. This is a really really weird error and please see my demo below. Thank you! \r\n\r\n``` r\r\nlibrary(tidyverse)\r\n\r\n### Behavior of tidy-select is changed after 1.0.6 release of dplyr. \r\n### If all_of function has been modified, it would be likely that all_of is causing the problem below. \r\n\r\n# Generate a random dataset with colname A, B, C, D, E\r\nFOOBAR.df <- data.frame(matrix(rnorm(50), nrow = 10)) %>% `colnames<-`(LETTERS[1:5])\r\n\r\n# Usually if you want the rowSums, c_across, all_of and a vector of string always did the trick when version <= 1.0.5\r\n\r\nFOOBAR.df %>% rowwise() %>% transmute(sum(c_across(all_of(c(\"A\", \"B\", \"C\", \"D\", \"E\")))))\r\n#> # A tibble: 10 x 1\r\n#> # Rowwise: \r\n#> `sum(c_across(all_of(c(\"A\", \"B\", \"C\", \"D\", \"E\"))))`\r\n#> <dbl>\r\n#> 1 -0.967 \r\n#> 2 -0.168 \r\n#> 3 0.0993\r\n#> 4 -0.959 \r\n#> 5 -2.26 \r\n#> 6 -4.41 \r\n#> 7 1.48 \r\n#> 8 -0.261 \r\n#> 9 2.16 \r\n#> 10 -3.38\r\n\r\n# But I got an error specific to the vector string of colname I was using in my dataset, thus I am typing in exactly what I used when this error occurred\r\ncolnames(FOOBAR.df) <- c(\"Prevotella\", \"Streptococcus\", \"Gemella\", \"Rothia\", \"Haemophilus\")\r\n\r\n# Try to get the row sum of all the variables in the vector of string, will result in an error. \r\nFOOBAR.df %>% rowwise() %>% transmute(sum(c_across(all_of(c(\"Prevotella\", \"Streptococcus\", \"Gemella\", \"Rothia\", \"Haemophilus\"))))) #%>% tryCatch(error = function(e) \"no such index at level 1\") \r\n#> Error: Problem with `mutate()` input `..1`.\r\n#> ℹ `..1 = sum(...)`.\r\n#> x no such index at level 1\r\n#> \r\n#> ℹ The error occurred in row 1.\r\n\r\n# Why I said that this error seems to be particularly to the vector string of colname? I've tried the following tests: \r\n\r\n# a) Replace a spelling, for example I shall spell \"Prevotella\", the first element in previous colname, as \"Prevotela\" with only 1 l and it works fine\r\n\r\ncolnames(FOOBAR.df) <- c(\"Prevotela\", \"Streptococcus\", \"Gemella\", \"Rothia\", \"Haemophilus\")\r\nFOOBAR.df %>% rowwise() %>% transmute(sum(c_across(all_of(c(\"Prevotela\", \"Streptococcus\", \"Gemella\", \"Rothia\", \"Haemophilus\")))))\r\n#> # A tibble: 10 x 1\r\n#> # Rowwise: \r\n#> `sum(...)`\r\n#> <dbl>\r\n#> 1 -0.967 \r\n#> 2 -0.168 \r\n#> 3 0.0993\r\n#> 4 -0.959 \r\n#> 5 -2.26 \r\n#> 6 -4.41 \r\n#> 7 1.48 \r\n#> 8 -0.261 \r\n#> 9 2.16 \r\n#> 10 -3.38\r\n\r\n# b) Removing one or some elements off that string and it works just fine \r\n\r\nFOOBAR.df %>% rowwise() %>% transmute(sum(c_across(all_of(c(\"Streptococcus\", \"Gemella\", \"Rothia\", \"Haemophilus\")))))\r\n#> # A tibble: 10 x 1\r\n#> # Rowwise: \r\n#> `sum(c_across(all_of(c(\"Streptococcus\", \"Gemella\", \"Rothia\", \"Haemophilus\"))…\r\n#> <dbl>\r\n#> 1 -1.60 \r\n#> 2 -1.10 \r\n#> 3 -0.0986\r\n#> 4 -0.576 \r\n#> 5 -1.25 \r\n#> 6 -4.27 \r\n#> 7 1.96 \r\n#> 8 0.491 \r\n#> 9 1.44 \r\n#> 10 -2.45\r\n\r\n# c) Wrap the string I was using into a vector, and feed the name of the vector as parameter of all_of, and it also works fine\r\n\r\ntest_colname_vec <- c(\"Prevotella\", \"Streptococcus\", \"Gemella\", \"Rothia\", \"Haemophilus\")\r\ncolnames(FOOBAR.df) <- test_colname_vec\r\nFOOBAR.df %>% rowwise() %>% transmute(sum(c_across(all_of(test_colname_vec))))\r\n#> # A tibble: 10 x 1\r\n#> # Rowwise: \r\n#> `sum(c_across(all_of(test_colname_vec)))`\r\n#> <dbl>\r\n#> 1 -0.967 \r\n#> 2 -0.168 \r\n#> 3 0.0993\r\n#> 4 -0.959 \r\n#> 5 -2.26 \r\n#> 6 -4.41 \r\n#> 7 1.48 \r\n#> 8 -0.261 \r\n#> 9 2.16 \r\n#> 10 -3.38\r\n\r\n# In summary, it seems to be an error related to how 'all_of' or 'c_across' deal with string vector as input parameter, \r\n# and is also likely sensitive to the content and length of string. This is really confusing, and the same code had zero problem in a 1.0.5 dplyr env\r\n# FYI, I am also listing the version of R I was using below: \r\nversion[c(\"system\", \"version.string\")]\r\n#> _ \r\n#> system x86_64, darwin15.6.0 \r\n#> version.string R version 3.6.2 (2019-12-12)\r\n```\r\n\r\n<sup>Created on 2021-05-12 by the [reprex package](https://reprex.tidyverse.org) (v2.0.0)<\/sup>\r\n", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5881", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5881/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5881/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5881/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5881", #> "id": 884636978, #> "node_id": "MDU6SXNzdWU4ODQ2MzY5Nzg=", #> "number": 5881, #> "title": "Changes in how internal functions are handled in across() breaks AMR", #> "user": { #> "login": "michaelquinn32", #> "id": 3473921, #> "node_id": "MDQ6VXNlcjM0NzM5MjE=", #> "avatar_url": "https://avatars.githubusercontent.com/u/3473921?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/michaelquinn32", #> "html_url": "https://github.com/michaelquinn32", #> "followers_url": "https://api.github.com/users/michaelquinn32/followers", #> "following_url": "https://api.github.com/users/michaelquinn32/following{/other_user}", #> "gists_url": "https://api.github.com/users/michaelquinn32/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/michaelquinn32/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/michaelquinn32/subscriptions", #> "organizations_url": "https://api.github.com/users/michaelquinn32/orgs", #> "repos_url": "https://api.github.com/users/michaelquinn32/repos", #> "events_url": 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"https://api.github.com/users/romainfrancois/followers", #> "following_url": "https://api.github.com/users/romainfrancois/following{/other_user}", #> "gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> }, #> "open_issues": 6, #> "closed_issues": 0, #> "state": "open", #> "created_at": "2021-05-17T09:31:45Z", #> "updated_at": "2021-05-17T14:15:40Z", #> "due_on": {}, #> "closed_at": {} #> }, #> "comments": 3, #> "created_at": "2021-05-10T16:53:32Z", #> "updated_at": "2021-05-17T16:56:47Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "Hi team!\r\n\r\nThis was originally reported in ropensci/skimr/issues/664, but I'm not fully certain how to address it there.\r\n\r\nThe user defines their own `skimr` summary functions in a package, some of these functions are internal:\r\nhttps://github.com/msberends/AMR/blob/551f99dc8fa6278b0a5bb5670153438e88135dec/R/aa_helper_pm_functions.R#L566\r\n\r\nAfter updating to dplyr 1.0.6, their checks on CRAN on failing.\r\nhttps://cran.r-project.org/web/checks/check_results_AMR.html\r\n\r\nPlease let me know if this is a `skimr` issue, and I can update accordingly.\r\n\r\nThanks for everything!\r\n\r\ncc: @msberends", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5880", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": 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"labels_url": "https://api.github.com/repos/tidyverse/dplyr/milestones/29/labels", #> "id": 6764658, #> "node_id": "MDk6TWlsZXN0b25lNjc2NDY1OA==", #> "number": 29, #> "title": "1.0.7", #> "description": "", #> "creator": { #> "login": "romainfrancois", #> "id": 2625526, #> "node_id": "MDQ6VXNlcjI2MjU1MjY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2625526?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/romainfrancois", #> "html_url": "https://github.com/romainfrancois", #> "followers_url": "https://api.github.com/users/romainfrancois/followers", #> "following_url": "https://api.github.com/users/romainfrancois/following{/other_user}", #> "gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> }, #> "open_issues": 6, #> "closed_issues": 0, #> "state": "open", #> "created_at": "2021-05-17T09:31:45Z", #> "updated_at": "2021-05-17T14:15:40Z", #> "due_on": {}, #> "closed_at": {} #> }, #> "comments": 0, #> "created_at": "2021-05-08T20:50:19Z", #> "updated_at": "2021-05-17T13:36:04Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "In the current documentation it is unclear as to how if_any() and if_all() are different. The current documentation describes the output of both functions to be the same. \r\n\r\nhttps://github.com/tidyverse/dplyr/blob/a763273ecbf52fb288901677ae5af3e6037ad77f/R/across.R#L9", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5877", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5877/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5877/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5877/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5877", #> "id": 878238441, #> "node_id": "MDU6SXNzdWU4NzgyMzg0NDE=", #> "number": 5877, #> "title": "Group_by / mutate drops attributes", #> "user": { #> "login": "traversc", #> "id": 9452194, #> "node_id": "MDQ6VXNlcjk0NTIxOTQ=", #> "avatar_url": "https://avatars.githubusercontent.com/u/9452194?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/traversc", #> "html_url": "https://github.com/traversc", #> "followers_url": "https://api.github.com/users/traversc/followers", #> "following_url": "https://api.github.com/users/traversc/following{/other_user}", #> "gists_url": "https://api.github.com/users/traversc/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/traversc/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/traversc/subscriptions", #> "organizations_url": "https://api.github.com/users/traversc/orgs", #> "repos_url": "https://api.github.com/users/traversc/repos", #> "events_url": "https://api.github.com/users/traversc/events{/privacy}", #> "received_events_url": "https://api.github.com/users/traversc/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 1, #> "created_at": "2021-05-07T00:29:41Z", #> "updated_at": "2021-05-17T14:09:21Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "Using group_by / mutate drops attributes from the data.frame. Can that be changed? \r\n\r\n```r\r\nlibrary(dplyr)\r\ndata(mtcars)\r\nattr(mtcars, \"test\") <- 1\r\n\r\n# Just mutate\r\nmtcars <- mtcars %>% mutate(x = 1)\r\nattr(mtcars, \"test\")\r\n# 1\r\n\r\n# Just group_by\r\nmtcars <- mtcars %>% group_by(cyl)\r\nattr(mtcars, \"test\")\r\n# 1\r\n\r\n# group_by mutate\r\nmtcars <- mtcars %>% mutate(gear = mean(gear))\r\nattr(mtcars, \"test\")\r\n# NULL\r\n```\r\n", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5875", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5875/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5875/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5875/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5875", #> "id": 877416528, #> "node_id": "MDU6SXNzdWU4Nzc0MTY1Mjg=", #> "number": 5875, #> "title": "`summarise.rowwise()` produces unnecessary message", #> "user": { #> "login": "hadley", #> "id": 4196, #> "node_id": "MDQ6VXNlcjQxOTY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/4196?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/hadley", #> "html_url": "https://github.com/hadley", #> "followers_url": "https://api.github.com/users/hadley/followers", #> "following_url": "https://api.github.com/users/hadley/following{/other_user}", #> "gists_url": "https://api.github.com/users/hadley/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/hadley/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/hadley/subscriptions", #> "organizations_url": "https://api.github.com/users/hadley/orgs", #> "repos_url": "https://api.github.com/users/hadley/repos", #> "events_url": "https://api.github.com/users/hadley/events{/privacy}", #> "received_events_url": "https://api.github.com/users/hadley/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [], #> "state": "open", #> "locked": false, #> "assignee": { #> "login": "romainfrancois", #> "id": 2625526, #> "node_id": "MDQ6VXNlcjI2MjU1MjY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2625526?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/romainfrancois", #> "html_url": "https://github.com/romainfrancois", #> "followers_url": "https://api.github.com/users/romainfrancois/followers", #> "following_url": "https://api.github.com/users/romainfrancois/following{/other_user}", #> "gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> }, #> "assignees": [ #> { #> "login": "romainfrancois", #> "id": 2625526, #> "node_id": "MDQ6VXNlcjI2MjU1MjY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2625526?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/romainfrancois", #> "html_url": "https://github.com/romainfrancois", #> "followers_url": "https://api.github.com/users/romainfrancois/followers", #> "following_url": "https://api.github.com/users/romainfrancois/following{/other_user}", #> "gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> } #> ], #> "milestone": { #> "url": "https://api.github.com/repos/tidyverse/dplyr/milestones/29", #> "html_url": "https://github.com/tidyverse/dplyr/milestone/29", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/milestones/29/labels", #> "id": 6764658, #> "node_id": "MDk6TWlsZXN0b25lNjc2NDY1OA==", #> "number": 29, #> "title": "1.0.7", #> "description": "", #> "creator": { #> "login": "romainfrancois", #> "id": 2625526, #> "node_id": "MDQ6VXNlcjI2MjU1MjY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2625526?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/romainfrancois", #> "html_url": "https://github.com/romainfrancois", #> "followers_url": "https://api.github.com/users/romainfrancois/followers", #> "following_url": "https://api.github.com/users/romainfrancois/following{/other_user}", #> "gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> }, #> "open_issues": 6, #> "closed_issues": 0, #> "state": "open", #> "created_at": "2021-05-17T09:31:45Z", #> "updated_at": "2021-05-17T14:15:40Z", #> "due_on": {}, #> "closed_at": {} #> }, #> "comments": 0, #> "created_at": "2021-05-06T11:53:55Z", #> "updated_at": "2021-05-17T14:15:40Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "body": "I think (to be consistent with `summarise.data.frame`) that this shouldn't message?\r\n\r\n``` r\r\nlibrary(dplyr, warn.conflicts = FALSE)\r\n\r\ndf <- tibble(\r\n x = 1:3,\r\n y = c(\"a\", \"d,e,f\", \"g,h\"),\r\n z = c(\"1\", \"2,3,4\", \"5,6\")\r\n)\r\n\r\ny <- df %>% \r\n rowwise() %>% \r\n summarise(n = length(x))\r\n#> `summarise()` has ungrouped output. You can override using the `.groups` argument.\r\n```\r\n\r\n<sup>Created on 2021-05-06 by the [reprex package](https://reprex.tidyverse.org) (v2.0.0)<\/sup>", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5874", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5874/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5874/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5874/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5874", #> "id": 877415815, #> "node_id": "MDU6SXNzdWU4Nzc0MTU4MTU=", #> "number": 5874, #> "title": "Multi-row mutate outputs", #> "user": { #> "login": "hadley", #> "id": 4196, #> "node_id": "MDQ6VXNlcjQxOTY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/4196?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/hadley", #> "html_url": "https://github.com/hadley", #> "followers_url": "https://api.github.com/users/hadley/followers", #> "following_url": "https://api.github.com/users/hadley/following{/other_user}", #> "gists_url": "https://api.github.com/users/hadley/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/hadley/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/hadley/subscriptions", #> "organizations_url": "https://api.github.com/users/hadley/orgs", #> "repos_url": "https://api.github.com/users/hadley/repos", #> "events_url": "https://api.github.com/users/hadley/events{/privacy}", #> "received_events_url": "https://api.github.com/users/hadley/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 0, #> "created_at": "2021-05-06T11:53:04Z", #> "updated_at": "2021-05-06T11:53:04Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "body": "It's currently hard to turn a column value into multiple rows. Should this be a single verb? \r\n\r\n``` r\r\nlibrary(dplyr, warn.conflicts = FALSE)\r\nlibrary(stringr)\r\n\r\ndf <- tibble(\r\n x = 1:3,\r\n y = c(\"a\", \"d,e,f\", \"g,h\"),\r\n z = c(\"1\", \"2,3,4\", \"5,6\")\r\n)\r\n\r\ndf %>% \r\n rowwise() %>% \r\n summarise(x, y = str_split(y, \",\")[[1]], z)\r\n#> `summarise()` has ungrouped output. You can override using the `.groups` argument.\r\n#> # A tibble: 6 x 3\r\n#> x y z \r\n#> <int> <chr> <chr>\r\n#> 1 1 a 1 \r\n#> 2 2 d 2,3,4\r\n#> 3 2 e 2,3,4\r\n#> 4 2 f 2,3,4\r\n#> 5 3 g 5,6 \r\n#> 6 3 h 5,6\r\n\r\ndf %>% \r\n mutate(y = str_split(y, \",\")) %>% \r\n tidyr::unnest_longer(y)\r\n#> # A tibble: 6 x 3\r\n#> x y z \r\n#> <int> <chr> <chr>\r\n#> 1 1 a 1 \r\n#> 2 2 d 2,3,4\r\n#> 3 2 e 2,3,4\r\n#> 4 2 f 2,3,4\r\n#> 5 3 g 5,6 \r\n#> 6 3 h 5,6\r\n```\r\n\r\n<sup>Created on 2021-05-06 by the [reprex package](https://reprex.tidyverse.org) (v2.0.0)<\/sup>", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5868", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5868/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5868/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5868/events", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5868", #> "id": 870236721, #> "node_id": "MDExOlB1bGxSZXF1ZXN0NjI1NDY1MDU0", #> "number": 5868, #> "title": "Add a `.locale` argument to `arrange()` and use radix ordering", #> "user": { #> "login": "DavisVaughan", #> "id": 19150088, #> "node_id": "MDQ6VXNlcjE5MTUwMDg4", #> "avatar_url": "https://avatars.githubusercontent.com/u/19150088?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/DavisVaughan", #> "html_url": "https://github.com/DavisVaughan", #> "followers_url": "https://api.github.com/users/DavisVaughan/followers", #> "following_url": "https://api.github.com/users/DavisVaughan/following{/other_user}", #> "gists_url": "https://api.github.com/users/DavisVaughan/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/DavisVaughan/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/DavisVaughan/subscriptions", #> "organizations_url": "https://api.github.com/users/DavisVaughan/orgs", #> "repos_url": "https://api.github.com/users/DavisVaughan/repos", #> "events_url": "https://api.github.com/users/DavisVaughan/events{/privacy}", #> "received_events_url": "https://api.github.com/users/DavisVaughan/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 0, #> "created_at": "2021-04-28T18:37:06Z", #> "updated_at": "2021-04-30T12:37:08Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "pull_request": { #> "url": "https://api.github.com/repos/tidyverse/dplyr/pulls/5868", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5868", #> "diff_url": "https://github.com/tidyverse/dplyr/pull/5868.diff", #> "patch_url": "https://github.com/tidyverse/dplyr/pull/5868.patch" #> }, #> "body": "Closes #5090 \r\nPart of #5808 \r\n\r\nRequires this vctrs PR https://github.com/r-lib/vctrs/pull/1375\r\n\r\nThe above vctrs PR switches `vec_order()` to always use radix ordering. This propagates through to dplyr in 3 places:\r\n\r\n- `arrange()`\r\n- `group_by()`\r\n- `with_order()`\r\n\r\nThis PR tackles `arrange()` by providing a new `.locale` argument with 3 possibilities:\r\n\r\n- `NULL`, the default, for C locale\r\n- A single string, like `\"en_US\"`, to use a specific locale, backed by and requiring stringi\r\n- A formula/function to generate the sort key (i.e. `stringi::stri_sort_key()`, or `tolower()`)\r\n\r\nThis PR is currently focused on the implementation, I've left TODOs for the news bullet and for documentation of locale handling.\r\n\r\nThe snapshot tests are a little noisy. Dev vctrs requires dev rlang, which tweaked how deparsing with `~` works, changing a few snapshot tests here.\r\n\r\nBuild errors seem to be from the fact that rlang now exports ellipsis functions, causing some warnings\r\n\r\n---\r\n\r\nThis would be a meaningful breaking change, as the system locale is no longer being respected. However, there are multiple benefits from this change:\r\n- Sorting character vectors in the C locale is much much faster\r\n- Even generating a sort key and then sorting in the C locale is faster than the current approach\r\n- This removes dependence on an environment variable (LC_COLLATE), which we generally advocate in favor of explicitly specifying arguments. In other words, this gets us better consistency across platforms.\r\n- This increases consistency with data.table, who always uses the C locale\r\n- This increases consistency with stringi (and you could make an argument for stringr too)\r\n\r\nFor English, the biggest change is that uppercase letters now sort before any lowercase letters. Previously it used a natural ordering of `c(\"a\", \"A\", \"b\", \"B\")`.\r\n\r\nFor other languages, sorting directly in the C locale is often not very meaningful, so they would have to supply a locale identifier.", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5859", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5859/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5859/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5859/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5859", #> "id": 863392141, #> "node_id": "MDU6SXNzdWU4NjMzOTIxNDE=", #> "number": 5859, #> "title": "Programming vignette: Showcase the difference between `{` and `{{` in tidyeval glue strings", #> "user": { #> "login": "aviast", #> "id": 3517099, #> "node_id": "MDQ6VXNlcjM1MTcwOTk=", #> "avatar_url": "https://avatars.githubusercontent.com/u/3517099?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/aviast", #> "html_url": "https://github.com/aviast", #> "followers_url": "https://api.github.com/users/aviast/followers", #> "following_url": "https://api.github.com/users/aviast/following{/other_user}", #> "gists_url": "https://api.github.com/users/aviast/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/aviast/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/aviast/subscriptions", #> "organizations_url": "https://api.github.com/users/aviast/orgs", #> "repos_url": "https://api.github.com/users/aviast/repos", #> "events_url": "https://api.github.com/users/aviast/events{/privacy}", #> "received_events_url": "https://api.github.com/users/aviast/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 674867158, #> "node_id": "MDU6TGFiZWw2NzQ4NjcxNTg=", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/documentation", #> "name": "documentation", #> "color": "CBBAB8", #> "default": true, #> "description": "" #> }, #> { #> "id": 1157599135, #> "node_id": "MDU6TGFiZWwxMTU3NTk5MTM1", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/tidy-dev-day%20:nerd_face:", #> "name": "tidy-dev-day :nerd_face:", #> "color": "CBBAB8", #> "default": false, #> "description": "Tidyverse Developer Day rstd.io/tidy-dev-day" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 4, #> "created_at": "2021-04-21T02:32:23Z", #> "updated_at": "2021-04-22T08:15:15Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "When a new column is created with name calculated from an existing variable the new column name includes quote characters.\r\n\r\n```r\r\nlibrary(dplyr)\r\nfoo <- tibble(a = 1:10)\r\nprefix <- \"prefix\"\r\nbar <- mutate(foo, \"{{prefix}}_b\" := a + 1)\r\ncolnames(bar)\r\n```\r\nThe output is `[1] \"a\" \"\\\"prefix\\\"_b\"` and I would expect to see `[1] \"a\" \"prefix_b\"`\r\n", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5853", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5853/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5853/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5853/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5853", #> "id": 860590738, #> "node_id": "MDU6SXNzdWU4NjA1OTA3Mzg=", #> "number": 5853, #> "title": "<error/tibble_error_assign_columns_non_na_only> when trying to left_join", #> "user": { #> "login": "cschwab1", #> "id": 47124408, #> "node_id": "MDQ6VXNlcjQ3MTI0NDA4", #> "avatar_url": "https://avatars.githubusercontent.com/u/47124408?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/cschwab1", #> "html_url": "https://github.com/cschwab1", #> "followers_url": "https://api.github.com/users/cschwab1/followers", #> "following_url": "https://api.github.com/users/cschwab1/following{/other_user}", #> "gists_url": "https://api.github.com/users/cschwab1/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/cschwab1/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/cschwab1/subscriptions", #> "organizations_url": "https://api.github.com/users/cschwab1/orgs", #> "repos_url": "https://api.github.com/users/cschwab1/repos", #> "events_url": "https://api.github.com/users/cschwab1/events{/privacy}", #> "received_events_url": "https://api.github.com/users/cschwab1/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 334407164, #> "node_id": "MDU6TGFiZWwzMzQ0MDcxNjQ=", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/reprex", #> "name": "reprex", #> "color": "C5C295", #> "default": false, #> "description": "needs a minimal reproducible example" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 1, #> "created_at": "2021-04-18T06:54:19Z", #> "updated_at": "2021-04-19T13:18:38Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "Apologies in advance for not including a reproducible example, but I'm having some issues with dataframes in RStudio. This only started about 15 minutes ago, and previously working with these dataframes was fine, but now when I try to join two dataframes using `left_join(b09g, b11c, by=c(\"RAUMID\"))`, I get the error `Error: Can't use NA as column index in a tibble for assignment`. The full error using `rlang::last_error()` is pasted below: \r\n\r\n```\r\n<error/tibble_error_assign_columns_non_na_only>\r\nCan't use NA as column index in a tibble for assignment.\r\nBacktrace:\r\n █\r\n 1. ├─gentriclass(b09g) %>% left_join(., b11c, by = c(\"RAUMID\"))\r\n 2. ├─dplyr::left_join(., b11c, by = c(\"RAUMID\"))\r\n 3. └─dplyr:::left_join.data.frame(., b11c, by = c(\"RAUMID\"))\r\n 4. └─dplyr:::join_mutate(...)\r\n 5. ├─base::`[<-`(...)\r\n 6. └─tibble:::`[<-.tbl_df`(...)\r\n 7. └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))\r\n 8. └─tibble:::vectbl_as_new_col_index(j, x, value, j_arg, value_arg)\r\n\r\n```\r\n\r\nAdditionally, when I type df$var into the console for just a few select dataframes, a small error message appears next to the text saying `(TypeError) : cannot read property 'substr' of null`. \r\n\r\nI'm pretty new to R and Rstudio, and this hasn't ever happened before — I've tried updating both `tidyverse` and updating to the newest version of RStudio, but nothing seems to help. ", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5836", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5836/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5836/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5836/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5836", #> "id": 851378640, #> "node_id": "MDU6SXNzdWU4NTEzNzg2NDA=", #> "number": 5836, #> "title": "Programming with dplyr needs example of user supplied name for new variable", #> "user": { #> "login": "hadley", #> "id": 4196, #> "node_id": "MDQ6VXNlcjQxOTY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/4196?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/hadley", #> "html_url": "https://github.com/hadley", #> "followers_url": "https://api.github.com/users/hadley/followers", #> "following_url": "https://api.github.com/users/hadley/following{/other_user}", #> "gists_url": "https://api.github.com/users/hadley/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/hadley/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/hadley/subscriptions", #> "organizations_url": "https://api.github.com/users/hadley/orgs", #> "repos_url": "https://api.github.com/users/hadley/repos", #> "events_url": "https://api.github.com/users/hadley/events{/privacy}", #> "received_events_url": "https://api.github.com/users/hadley/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 674867158, #> "node_id": "MDU6TGFiZWw2NzQ4NjcxNTg=", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/documentation", #> "name": "documentation", #> "color": "CBBAB8", #> "default": true, #> "description": "" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 0, #> "created_at": "2021-04-06T12:33:51Z", #> "updated_at": "2021-04-09T09:41:50Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "body": "Including advice to take this as a string to follow tidyverse conventions. ", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5829", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5829/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5829/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5829/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5829", #> "id": 841141819, #> "node_id": "MDU6SXNzdWU4NDExNDE4MTk=", #> "number": 5829, #> "title": "relocate.data.frame: factor out or make default method ", #> "user": { #> "login": "nealrichardson", #> "id": 2975928, #> "node_id": "MDQ6VXNlcjI5NzU5Mjg=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2975928?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/nealrichardson", #> "html_url": "https://github.com/nealrichardson", #> "followers_url": "https://api.github.com/users/nealrichardson/followers", #> "following_url": "https://api.github.com/users/nealrichardson/following{/other_user}", #> "gists_url": "https://api.github.com/users/nealrichardson/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/nealrichardson/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/nealrichardson/subscriptions", #> "organizations_url": "https://api.github.com/users/nealrichardson/orgs", #> "repos_url": "https://api.github.com/users/nealrichardson/repos", #> "events_url": "https://api.github.com/users/nealrichardson/events{/privacy}", #> "received_events_url": "https://api.github.com/users/nealrichardson/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 17708200, #> "node_id": "MDU6TGFiZWwxNzcwODIwMA==", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/feature", #> "name": "feature", #> "color": "B4C3AE", #> "default": false, #> "description": "a feature request or enhancement" #> }, #> { #> "id": 1726765020, #> "node_id": "MDU6TGFiZWwxNzI2NzY1MDIw", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/selection%20%F0%9F%A7%BA", #> "name": "selection 🧺", #> "color": "eeeeee", #> "default": false, #> "description": "tidyselect, scoped verbs, etc." #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 2, #> "created_at": "2021-03-25T17:14:53Z", #> "updated_at": "2021-04-19T13:22:52Z", #> "closed_at": {}, #> "author_association": "CONTRIBUTOR", #> "active_lock_reason": {}, #> "body": "Looking at [relocate.data.frame](https://github.com/tidyverse/dplyr/blob/614389a391504ee17708aca2cce3d92b123ac449/R/relocate.R#L53-L90) in https://github.com/apache/arrow/pull/9798, it seems that the logic there is pretty generic and does not actually require a data.frame. As long as `.data` has a `dim()` method (for `ncol()` on L81), a `[<-` method (L84, to apply the reordering), and a `names()` method (for `tidyselect::eval_select()`), this function should work. \r\n\r\nIn the short run, it seems to make sense for us to copy and adapt the `relocate.data.frame` method for Arrow objects rather than try to use the (unexported) dplyr data.frame method off-label. But for the future, we were wondering if there was an opportunity to factor this code differently to allow reuse by non-data.frame backends. Ideas that occurred to us:\r\n\r\n* Factor out the core logic and perhaps move to `tidyselect`, as in `vars_relocate` alongside `vars_select` et al. Maybe something like `function(.data, ..., .before = NULL, .after = NULL)` that would return an integer vector of selected/reordered column indices.\r\n* Just rename `relocate.data.frame` to `relocate.default` and then this should just work for any `.data` that has those three methods implemented.\r\n\r\nIf you think this is worthwhile (or see a better alternative), we're happy to submit a PR.\r\n\r\ncc @ianmcook @romainfrancois ", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5823", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5823/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5823/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5823/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5823", #> "id": 838835728, #> "node_id": "MDU6SXNzdWU4Mzg4MzU3Mjg=", #> "number": 5823, #> "title": "Include example of using a data frame in `mutate()`", #> "user": { #> "login": "r2evans", #> "id": 5815808, #> "node_id": "MDQ6VXNlcjU4MTU4MDg=", #> "avatar_url": "https://avatars.githubusercontent.com/u/5815808?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/r2evans", #> "html_url": "https://github.com/r2evans", #> "followers_url": "https://api.github.com/users/r2evans/followers", #> "following_url": "https://api.github.com/users/r2evans/following{/other_user}", #> "gists_url": "https://api.github.com/users/r2evans/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/r2evans/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/r2evans/subscriptions", #> "organizations_url": "https://api.github.com/users/r2evans/orgs", #> "repos_url": "https://api.github.com/users/r2evans/repos", #> "events_url": "https://api.github.com/users/r2evans/events{/privacy}", #> "received_events_url": "https://api.github.com/users/r2evans/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 674867158, #> "node_id": "MDU6TGFiZWw2NzQ4NjcxNTg=", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/documentation", #> "name": "documentation", #> "color": "CBBAB8", #> "default": true, #> "description": "" #> }, #> { #> "id": 1157599134, #> "node_id": "MDU6TGFiZWwxMTU3NTk5MTM0", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/help%20wanted%20:heart:", #> "name": "help wanted :heart:", #> "color": "C5C295", #> "default": false, #> "description": "we'd love your help!" #> }, #> { #> "id": 1157599135, #> "node_id": "MDU6TGFiZWwxMTU3NTk5MTM1", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/tidy-dev-day%20:nerd_face:", #> "name": "tidy-dev-day :nerd_face:", #> "color": "CBBAB8", #> "default": false, #> "description": "Tidyverse Developer Day rstd.io/tidy-dev-day" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 4, #> "created_at": "2021-03-23T15:16:46Z", #> "updated_at": "2021-04-19T13:23:49Z", #> "closed_at": {}, #> "author_association": "CONTRIBUTOR", #> "active_lock_reason": {}, #> "body": "From https://github.com/tidyverse/dplyr/issues/5494#issuecomment-679990205:\r\n\r\n> You can already do that in dplyr, just by returning a data frame:\r\n> \r\n> ```\r\n> library(dplyr, warn.conflicts = FALSE)\r\n> \r\n> df <- data.frame(x = 1, y = 2)\r\n> \r\n> my_f <- function(x) {\r\n> data.frame(x1 = x + 1, x2 = x * 2)\r\n> }\r\n> df %>% mutate(my_f(x))\r\n> #> x y x1 x2\r\n> #> 1 1 2 2 2\r\n> ```\r\n> \r\n> Created on 2020-08-25 by the [reprex package](https://reprex.tidyverse.org) (v0.3.0.9001)\r\n\r\nI'm one of today's [lucky 10,000](https://xkcd.com/1053/). I've been using `dplyr` heavily for many years, and for some reason never knew that it was feasible (even desirable) to use unnamed expressions in `mutate`. I think this is one of the more under-sold capabilities of `mutate` and `summarize`. This was in response to a [SO comment](https://stackoverflow.com/questions/66763386/daily-correlation-in-r/66763782?noredirect=1#comment118019219_66763782).\r\n\r\nI think it's absolutely useful to know that this works:\r\n\r\n```r\r\nmtcars %>%\r\n group_by(cyl) %>%\r\n summarize(as.data.frame(cor.test(disp,hp)[c(\"estimate\",\"p.value\")]))\r\n# # A tibble: 3 x 3\r\n# cyl estimate p.value\r\n# * <dbl> <dbl> <dbl>\r\n# 1 4 0.435 0.182\r\n# 2 6 -0.514 0.238\r\n# 3 8 0.118 0.687\r\n```\r\n\r\nAnd while it might seem obvious to some, I cannot find reference to this method in `?mutate` or any of the package `.Rd` files. (It *is* used in several of the tests.)\r\n\r\nI can provide a PR, is there interest in adding a mention to this in `mutate` and `summarize` help docs?", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5808", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5808/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5808/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5808/events", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5808", #> "id": 827542153, #> "node_id": "MDExOlB1bGxSZXF1ZXN0NTg5NDQyMjM4", #> "number": 5808, #> "title": "use vctrs:::vec_order_locs() in group_by() and vctrs:::vec_order_radix() in arrange()", #> "user": { #> "login": "romainfrancois", #> "id": 2625526, #> "node_id": "MDQ6VXNlcjI2MjU1MjY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2625526?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/romainfrancois", #> "html_url": "https://github.com/romainfrancois", #> "followers_url": "https://api.github.com/users/romainfrancois/followers", #> "following_url": "https://api.github.com/users/romainfrancois/following{/other_user}", #> "gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 6, #> "created_at": "2021-03-10T10:59:26Z", #> "updated_at": "2021-04-29T12:02:31Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "pull_request": { #> "url": "https://api.github.com/repos/tidyverse/dplyr/pulls/5808", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5808", #> "diff_url": "https://github.com/tidyverse/dplyr/pull/5808.diff", #> "patch_url": "https://github.com/tidyverse/dplyr/pull/5808.patch" #> }, #> "body": "closes #4406\r\n\r\n``` r\r\nset.seed(42)\r\nlibrary(dplyr)\r\nlibrary(tibble)\r\nx <- runif(1e7)\r\ngrp <- sample(1e6, 1e7, replace=TRUE)\r\ntib <- tibble(grp, x)\r\n\r\nbench::mark(\r\n tib %>% group_by(grp), \r\n)\r\n#> Warning: Some expressions had a GC in every iteration; so filtering is disabled.\r\n#> # A tibble: 1 x 6\r\n#> expression min median `itr/sec` mem_alloc `gc/sec`\r\n#> <bch:expr> <bch:tm> <bch:tm> <dbl> <bch:byt> <dbl>\r\n#> 1 tib %>% group_by(grp) 627ms 627ms 1.60 228MB 4.79\r\n```\r\n\r\nvs on master: \r\n\r\n``` r\r\nset.seed(42)\r\nlibrary(dplyr)\r\nlibrary(tibble)\r\nx <- runif(1e7)\r\ngrp <- sample(1e6, 1e7, replace=TRUE)\r\ntib <- tibble(grp, x)\r\n\r\nbench::mark(\r\n not_ordered = tib %>% group_by(grp), \r\n ordered = {\r\n o <- order(grp)\r\n tibo <- tibble(grp=grp[o], x=x[o])\r\n b <- tibo %>% group_by(grp)\r\n }, \r\n check = FALSE\r\n)\r\n#> Warning: Some expressions had a GC in every iteration; so filtering is disabled.\r\n#> # A tibble: 2 x 6\r\n#> expression min median `itr/sec` mem_alloc `gc/sec`\r\n#> <bch:expr> <bch:tm> <bch:tm> <dbl> <bch:byt> <dbl>\r\n#> 1 not_ordered 2.64s 2.64s 0.379 248MB 1.14\r\n#> 2 ordered 1.33s 1.33s 0.752 400MB 1.50\r\n```\r\n\r\n<sup>Created on 2021-03-10 by the [reprex package](https://reprex.tidyverse.org) (v0.3.0)<\/sup>", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5785", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5785/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5785/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5785/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5785", #> "id": 816054299, #> "node_id": "MDU6SXNzdWU4MTYwNTQyOTk=", #> "number": 5785, #> "title": "Should the across help file also cater to the 'apply to dataframe` use case?", #> "user": { #> "login": "MilesMcBain", #> "id": 9996346, #> "node_id": "MDQ6VXNlcjk5OTYzNDY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/9996346?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/MilesMcBain", #> "html_url": "https://github.com/MilesMcBain", #> "followers_url": "https://api.github.com/users/MilesMcBain/followers", #> "following_url": "https://api.github.com/users/MilesMcBain/following{/other_user}", #> "gists_url": "https://api.github.com/users/MilesMcBain/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/MilesMcBain/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/MilesMcBain/subscriptions", #> "organizations_url": "https://api.github.com/users/MilesMcBain/orgs", #> "repos_url": "https://api.github.com/users/MilesMcBain/repos", #> "events_url": "https://api.github.com/users/MilesMcBain/events{/privacy}", #> "received_events_url": "https://api.github.com/users/MilesMcBain/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 674867158, #> "node_id": "MDU6TGFiZWw2NzQ4NjcxNTg=", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/documentation", #> "name": "documentation", #> "color": "CBBAB8", #> "default": true, #> "description": "" #> }, #> { #> "id": 1157599135, #> "node_id": "MDU6TGFiZWwxMTU3NTk5MTM1", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/tidy-dev-day%20:nerd_face:", #> "name": "tidy-dev-day :nerd_face:", #> "color": "CBBAB8", #> "default": false, #> "description": "Tidyverse Developer Day rstd.io/tidy-dev-day" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 2, #> "created_at": "2021-02-25T03:42:06Z", #> "updated_at": "2021-03-04T08:41:31Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "I had difficulty with compactly expressing a mutate that wanted the result column to be a function of several input columns, to be selected via tidy select.\r\n\r\nEventually @jennybc linked me to: https://dplyr.tidyverse.org/articles/rowwise.html#row-wise-summary-functions\r\n\r\nWhich demonstrated I can do something fairly clean like this:\r\n\r\n```r\r\ncol_prod2 <- function(.df) {\r\n .df %>%\r\n reduce(.f = `*`)\r\n }\r\n\r\nrisk_matrix %>%\r\n mutate(interest_level = col_prod2(across(ends_with(\"level\"))))\r\n```\r\n\r\n`across` was the first thing I looked at, but the help file is geared entirely to the `apply to each column` usecase, which was enough to convince me to stop investigating it. Maybe the help file should contain an example from the linked vignette?", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5711", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5711/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5711/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5711/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5711", #> "id": 795421720, #> "node_id": "MDU6SXNzdWU3OTU0MjE3MjA=", #> "number": 5711, #> "title": "Unexpected behavior in na_if ", #> "user": { #> "login": "hjohns12", #> "id": 23141035, #> "node_id": "MDQ6VXNlcjIzMTQxMDM1", #> "avatar_url": "https://avatars.githubusercontent.com/u/23141035?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/hjohns12", #> "html_url": "https://github.com/hjohns12", #> "followers_url": "https://api.github.com/users/hjohns12/followers", #> "following_url": "https://api.github.com/users/hjohns12/following{/other_user}", #> "gists_url": "https://api.github.com/users/hjohns12/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/hjohns12/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/hjohns12/subscriptions", #> "organizations_url": "https://api.github.com/users/hjohns12/orgs", #> "repos_url": "https://api.github.com/users/hjohns12/repos", #> "events_url": "https://api.github.com/users/hjohns12/events{/privacy}", #> "received_events_url": "https://api.github.com/users/hjohns12/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 1726774808, #> "node_id": "MDU6TGFiZWwxNzI2Nzc0ODA4", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/funs%20:laughing:", #> "name": "funs :laughing:", #> "color": "eeeeee", #> "default": false, #> "description": "" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 1, #> "created_at": "2021-01-27T20:30:42Z", #> "updated_at": "2021-01-28T11:22:02Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "Tried using `na_if` today to turn values in a column that are less than zero to NA. Tried the `ifelse` alternative and that gave the behavior I expected to see when using `na_if`. \r\n\r\n---\r\n\r\n```r\r\ntest <- tibble(Staff.Confirmed = c(0, 1, -999), Residents.Confirmed = c(12, -192, 0))\r\nprint(test)\r\n\r\nout <- test %>% \r\n mutate(staff_conf_naif = na_if(Staff.Confirmed, Staff.Confirmed < 0),\r\n staff_conf_ifelse = ifelse(Staff.Confirmed < 0, NA, Staff.Confirmed),\r\n res_conf_naif = na_if(Residents.Confirmed, Residents.Confirmed < 0),\r\n res_conf_ifelse = ifelse(Residents.Confirmed < 0, NA, Residents.Confirmed)) %>% \r\n select(Staff.Confirmed, staff_conf_naif, staff_conf_ifelse,\r\n Residents.Confirmed, res_conf_naif, res_conf_ifelse)\r\nprint(out)\r\n```\r\n\r\nWhen I use `na_if` in this mutate, it only makes changes to values equal to zero in the column referenced. Not sure if this is the intended behavior, but it seems a bit strange", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5700", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5700/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5700/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5700/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5700", #> "id": 790293697, #> "node_id": "MDU6SXNzdWU3OTAyOTM2OTc=", #> "number": 5700, #> "title": "Multi-join suffixes", #> "user": { #> "login": "eggrandio", #> "id": 49569940, #> "node_id": "MDQ6VXNlcjQ5NTY5OTQw", #> "avatar_url": "https://avatars.githubusercontent.com/u/49569940?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/eggrandio", #> "html_url": "https://github.com/eggrandio", #> "followers_url": "https://api.github.com/users/eggrandio/followers", #> "following_url": "https://api.github.com/users/eggrandio/following{/other_user}", #> "gists_url": "https://api.github.com/users/eggrandio/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/eggrandio/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/eggrandio/subscriptions", #> "organizations_url": "https://api.github.com/users/eggrandio/orgs", #> "repos_url": "https://api.github.com/users/eggrandio/repos", #> "events_url": "https://api.github.com/users/eggrandio/events{/privacy}", #> "received_events_url": "https://api.github.com/users/eggrandio/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 17708200, #> "node_id": "MDU6TGFiZWwxNzcwODIwMA==", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/feature", #> "name": "feature", #> "color": "B4C3AE", #> "default": false, #> "description": "a feature request or enhancement" #> }, #> { #> "id": 1257707950, #> "node_id": "MDU6TGFiZWwxMjU3NzA3OTUw", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/join%20:twisted_rightwards_arrows:", #> "name": "join :twisted_rightwards_arrows:", #> "color": "eeeeee", #> "default": false, #> "description": "Related to joins" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 2, #> "created_at": "2021-01-20T20:21:45Z", #> "updated_at": "2021-04-29T15:49:01Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "Hi,\r\n\r\nI want to merge several data.frames with some common columns and append a suffix to the column names to keep track from where does the data for each column come from. \r\n\r\nI can do it easily with the suffix term in the first full_join, but when I do the second join, no suffixes are added. I can rename the third data.frame so it has suffixes, but I wanted to know if there is another way of doing it using the suffix term.\r\n\r\nHere is an example code:\r\n```\r\nx = data.frame(col1 = c(\"a\",\"b\",\"c\"), col2 = 1:3, col3 = 1:3)\r\ny = data.frame(col1 = c(\"b\",\"c\",\"d\"), col2 = 4:6, col3 = 1:3)\r\nz = data.frame(col1 = c(\"c\",\"d\",\"a\"), col2 = 7:9, col3 = 1:3)\r\n\r\n> df = full_join(x, y, by = \"col1\", suffix = c(\"_x\",\"_y\")) %>% \r\n full_join(z, by = \"col1\", suffix = c(\"\",\"_z\")) \r\n\r\n> df\r\n col1 col2_x col3_x col2_y col3_y col2 col3\r\n1 a 1 1 NA NA 9 3\r\n2 b 2 2 4 1 NA NA\r\n3 c 3 3 5 2 7 1\r\n4 d NA NA 6 3 8 2\r\n```\r\nI was expecting that col2 and col3 from data.frame z would have a \"_z\" suffix. I have tried using empty suffixes while merging two data.frames and it works.\r\n\r\nI can work around by renaming the columns in z before doing the second full_join, but in my real data I have several common columns, and if I wanted to merge more data.frames it would complicate the code. This is my expected output.\r\n\r\n```\r\n> colnames(z) = paste0(colnames(z),\"_z\")\r\n\r\n> df = full_join(x, y, by = \"col1\", suffix = c(\"_x\",\"_y\")) %>% \r\n full_join(z, by = c(\"col1\"=\"col1_z\"))\r\n\r\n> df\r\n col1 col2_x col3_x col2_y col3_y col2_z col3_z\r\n1 a 1 1 NA NA 9 3\r\n2 b 2 2 4 1 NA NA\r\n3 c 3 3 5 2 7 1\r\n4 d NA NA 6 3 8 2\r\n```\r\n\r\nI have seen other [similar problems][1] in which adding an extra column to keep track of the source data.frame is used, but I was wondering why does not the suffix term work with multiple joins.\r\n\r\nPS: If I keep the first suffix empty, I can add suffixes in the second join, but that will leave the col2 and col3 form x without suffix.\r\n\r\n```\r\n> df = full_join(x, y, by = \"col1\", suffix = c(\"\",\"_y\")) %>% \r\n full_join(z, by = \"col1\", suffix = c(\"\",\"_z\"))\r\n\r\n> df\r\n col1 col2 col3 col2_y col3_y col2_z col3_z\r\n1 a 1 1 NA NA 9 3\r\n2 b 2 2 4 1 NA NA\r\n3 c 3 3 5 2 7 1\r\n4 d NA NA 6 3 8 2\r\n```\r\n\r\nI might be missing why this is not working the way I expected, but in principle it should be very simple to add a suffix to the \"newly added\" columns.\r\n\r\nThanks!\r\n\r\n [1]: https://stackoverflow.com/questions/65152352/suffixes-when-merging-more-than-two-data-frames-with-full-join", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5699", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5699/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5699/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5699/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5699", #> "id": 790239328, #> "node_id": "MDU6SXNzdWU3OTAyMzkzMjg=", #> "number": 5699, #> "title": "`rows_patch(x, y, ...)` shows unhelpful error message when `nrow(y) > nrow(x)`", #> "user": { #> "login": "everetr", #> "id": 9023041, #> "node_id": "MDQ6VXNlcjkwMjMwNDE=", #> "avatar_url": "https://avatars.githubusercontent.com/u/9023041?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/everetr", #> "html_url": "https://github.com/everetr", #> "followers_url": "https://api.github.com/users/everetr/followers", #> "following_url": "https://api.github.com/users/everetr/following{/other_user}", #> "gists_url": "https://api.github.com/users/everetr/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/everetr/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/everetr/subscriptions", #> "organizations_url": "https://api.github.com/users/everetr/orgs", #> "repos_url": "https://api.github.com/users/everetr/repos", #> "events_url": "https://api.github.com/users/everetr/events{/privacy}", #> "received_events_url": "https://api.github.com/users/everetr/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 17708198, #> "node_id": "MDU6TGFiZWwxNzcwODE5OA==", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/bug", #> "name": "bug", #> "color": "E0B3A2", #> "default": true, #> "description": "an unexpected problem or unintended behavior" #> }, #> { #> "id": 1257707950, #> "node_id": "MDU6TGFiZWwxMjU3NzA3OTUw", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/join%20:twisted_rightwards_arrows:", #> "name": "join :twisted_rightwards_arrows:", #> "color": "eeeeee", #> "default": false, #> "description": "Related to joins" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 0, #> "created_at": "2021-01-20T19:06:49Z", #> "updated_at": "2021-04-19T13:47:23Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "When I try to patch a data frame (`x` in the below example) using another data frame with more rows (`y`), an error is thrown with an unhelpful message. It took some time to figure out that the row number difference was the source of the error. `rlang::last_error()` and `rlang::last_trace()` didn't help.\r\n\r\nIs there any reason a data frame *should not* be patched by a data frame with more rows? I could be missing some theory here. If there *is* a good reason why this should not be allowed, can I add that to the documentation for `rows_patch()` and friends?\r\n\r\nExample:\r\n\r\n``` r\r\nsuppressPackageStartupMessages(library(dplyr))\r\n\r\nx = data.frame(id = c(1, 2, 3), foo = c(\"a\", \"b\", NA))\r\ny = data.frame(id = c(1, 3, 5, 7), foo = c(\"a\", \"c\", \"e\", \"g\"))\r\ndplyr::rows_patch(x, y, by = \"id\")\r\n#> Error: Attempting to patch missing rows.\r\n```\r\n\r\n<sup>Created on 2021-01-20 by the [reprex package](https://reprex.tidyverse.org) (v0.3.0)<\/sup>\r\n<details>\r\n<summary>\r\nSession info\r\n<\/summary>\r\n\r\n``` r\r\nsessionInfo()\r\n#> R version 4.0.3 (2020-10-10)\r\n#> Platform: x86_64-w64-mingw32/x64 (64-bit)\r\n#> Running under: Windows 10 x64 (build 19041)\r\n#> \r\n#> Matrix products: default\r\n#> \r\n#> locale:\r\n#> [1] LC_COLLATE=English_United States.1252 \r\n#> [2] LC_CTYPE=English_United States.1252 \r\n#> [3] LC_MONETARY=English_United States.1252\r\n#> [4] LC_NUMERIC=C \r\n#> [5] LC_TIME=English_United States.1252 \r\n#> \r\n#> attached base packages:\r\n#> [1] stats graphics grDevices utils datasets methods base \r\n#> \r\n#> other attached packages:\r\n#> [1] dplyr_1.0.3\r\n#> \r\n#> loaded via a namespace (and not attached):\r\n#> [1] knitr_1.30 magrittr_2.0.1 tidyselect_1.1.0 R6_2.5.0 \r\n#> [5] rlang_0.4.10 stringr_1.4.0 highr_0.8 tools_4.0.3 \r\n#> [9] xfun_0.20 DBI_1.1.1 htmltools_0.5.1 ellipsis_0.3.1 \r\n#> [13] yaml_2.2.1 digest_0.6.27 assertthat_0.2.1 tibble_3.0.5 \r\n#> [17] lifecycle_0.2.0 crayon_1.3.4 purrr_0.3.4 vctrs_0.3.6 \r\n#> [21] glue_1.4.2 evaluate_0.14 rmarkdown_2.6 stringi_1.5.3 \r\n#> [25] compiler_4.0.3 pillar_1.4.7 generics_0.1.0 pkgconfig_2.0.3\r\n```\r\n\r\n<\/details>\r\n\r\nExpected output:\r\n\r\n``` r\r\ndata.frame(id = c(1, 2, 3), foo = c(\"a\", \"b\", \"c\"))\r\n#> id foo\r\n#> 1 1 a\r\n#> 2 2 b\r\n#> 3 3 c\r\n```\r\n", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5691", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5691/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5691/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5691/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5691", #> "id": 786152003, #> "node_id": "MDU6SXNzdWU3ODYxNTIwMDM=", #> "number": 5691, #> "title": "Update to latest lifecycle API", #> "user": { #> "login": "hadley", #> "id": 4196, #> "node_id": "MDQ6VXNlcjQxOTY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/4196?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/hadley", #> "html_url": "https://github.com/hadley", #> "followers_url": "https://api.github.com/users/hadley/followers", #> "following_url": 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#> "created_at": "2021-01-14T16:55:07Z", #> "updated_at": "2021-04-19T13:44:31Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "body": "", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5690", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5690/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5690/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5690/events", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5690", #> "id": 786007891, #> "node_id": "MDExOlB1bGxSZXF1ZXN0NTU0OTQ3MTc0", #> "number": 5690, #> "title": "Defunct underscore and _each() functions", #> "user": { #> "login": "romainfrancois", #> "id": 2625526, #> "node_id": "MDQ6VXNlcjI2MjU1MjY=", #> "avatar_url": 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"open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 4, #> "created_at": "2021-01-14T13:54:43Z", #> "updated_at": "2021-04-20T16:41:08Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "pull_request": { #> "url": "https://api.github.com/repos/tidyverse/dplyr/pulls/5690", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5690", #> "diff_url": "https://github.com/tidyverse/dplyr/pull/5690.diff", #> "patch_url": "https://github.com/tidyverse/dplyr/pull/5690.patch" #> }, #> "body": "In 1.0.3 we removed the `.default()` methods that were calling the underscore functions (the code says they were deprecated in 0.7.0). \r\n\r\nThis makes them defunct. \r\n\r\n#5573", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5685", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": 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"starred_url": "https://api.github.com/users/deschen1/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/deschen1/subscriptions", #> "organizations_url": "https://api.github.com/users/deschen1/orgs", #> "repos_url": "https://api.github.com/users/deschen1/repos", #> "events_url": "https://api.github.com/users/deschen1/events{/privacy}", #> "received_events_url": "https://api.github.com/users/deschen1/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 17708200, #> "node_id": "MDU6TGFiZWwxNzcwODIwMA==", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/feature", #> "name": "feature", #> "color": "B4C3AE", #> "default": false, #> "description": "a feature request or enhancement" #> }, #> { #> "id": 1257707950, #> "node_id": "MDU6TGFiZWwxMjU3NzA3OTUw", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/join%20:twisted_rightwards_arrows:", #> "name": "join :twisted_rightwards_arrows:", #> "color": "eeeeee", #> "default": false, #> "description": "Related to joins" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 0, #> "created_at": "2021-01-13T08:37:02Z", #> "updated_at": "2021-04-19T13:41:08Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "Currently, rows_* functions like `rows_update` require an unnamed character string for the `by` parameter, which makes it impossible to dynamically pass id column names. *_join functions, however, allow for a named by-vector so that names can be passed dynamically (see here for some reference: https://stackoverflow.com/questions/65688508/tidyverse-join-two-data-sets-with-dynamic-column-names-for-by-column).\r\n\r\nIt would be desirable if the rows_* function also allow for named vectors. \r\n\r\n```\r\nlibrary(tidyverse)\r\nx <- data.frame(a1 = c(1, 2, 3))\r\ny <- data.frame(a2 = c(1, 2, 4),\r\n new = c(\"a\", \"b\", \"c\"))\r\n\r\nz <- data.frame(a2 = 3,\r\n new = \"d\")\r\n\r\nx_name <- \"a1\"\r\ny_name <- \"a2\"\r\n\r\n# works\r\nx_new <- x %>%\r\n left_join(., y, by = setNames(y_name, x_name))\r\n\r\n# doesn't work\r\nx_new %>%\r\n rows_update(., z, by = setNames(y_name, x_name))\r\n\r\n# Error: `by` must be unnamed.\r\n```", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5679", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5679/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5679/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5679/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5679", #> "id": 780191075, #> "node_id": "MDU6SXNzdWU3ODAxOTEwNzU=", #> "number": 5679, #> "title": "data-raw/starwars.r still refers to swapi.co", #> "user": { #> "login": "hongooi73", #> "id": 11328890, #> "node_id": "MDQ6VXNlcjExMzI4ODkw", #> "avatar_url": "https://avatars.githubusercontent.com/u/11328890?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/hongooi73", #> "html_url": "https://github.com/hongooi73", #> "followers_url": "https://api.github.com/users/hongooi73/followers", #> "following_url": "https://api.github.com/users/hongooi73/following{/other_user}", #> "gists_url": "https://api.github.com/users/hongooi73/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/hongooi73/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/hongooi73/subscriptions", #> "organizations_url": "https://api.github.com/users/hongooi73/orgs", #> "repos_url": "https://api.github.com/users/hongooi73/repos", #> "events_url": "https://api.github.com/users/hongooi73/events{/privacy}", #> "received_events_url": "https://api.github.com/users/hongooi73/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 674867158, #> "node_id": "MDU6TGFiZWw2NzQ4NjcxNTg=", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/documentation", #> "name": "documentation", #> "color": "CBBAB8", #> "default": true, #> "description": "" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 3, #> "created_at": "2021-01-06T07:40:54Z", #> "updated_at": "2021-01-12T19:23:14Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "The main package documentation has been revised to refer to swapi.dev, but the actual code to retrieve the data still refers to swapi.co.", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5674", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5674/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5674/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5674/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5674", #> "id": 778225382, #> "node_id": "MDU6SXNzdWU3NzgyMjUzODI=", #> "number": 5674, #> "title": "Should rowwise() be called group_by_row()?", #> "user": { #> "login": "hadley", #> "id": 4196, #> "node_id": "MDQ6VXNlcjQxOTY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/4196?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/hadley", #> "html_url": "https://github.com/hadley", #> "followers_url": "https://api.github.com/users/hadley/followers", #> "following_url": "https://api.github.com/users/hadley/following{/other_user}", #> "gists_url": "https://api.github.com/users/hadley/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/hadley/starred{/owner}{/repo}", #> "subscriptions_url": 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[], #> "milestone": {}, #> "comments": 6, #> "created_at": "2021-01-04T16:52:19Z", #> "updated_at": "2021-04-19T13:45:38Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "body": "Might communicate what it does a little better, and it makes it more clear that you use `ungroup()` to revert it.", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5664", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5664/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5664/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5664/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5664", #> "id": 770889023, #> "node_id": "MDU6SXNzdWU3NzA4ODkwMjM=", #> "number": 5664, #> "title": "dplyr edition", #> "user": { #> "login": "hadley", #> "id": 4196, #> "node_id": "MDQ6VXNlcjQxOTY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/4196?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/hadley", #> "html_url": "https://github.com/hadley", #> "followers_url": "https://api.github.com/users/hadley/followers", #> "following_url": "https://api.github.com/users/hadley/following{/other_user}", #> "gists_url": "https://api.github.com/users/hadley/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/hadley/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/hadley/subscriptions", #> "organizations_url": "https://api.github.com/users/hadley/orgs", #> "repos_url": "https://api.github.com/users/hadley/repos", #> "events_url": "https://api.github.com/users/hadley/events{/privacy}", #> "received_events_url": "https://api.github.com/users/hadley/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 17708200, #> "node_id": "MDU6TGFiZWwxNzcwODIwMA==", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/feature", #> "name": "feature", #> "color": "B4C3AE", #> "default": false, #> "description": "a feature request or enhancement" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 1, #> "created_at": "2020-12-18T13:31:31Z", #> "updated_at": "2021-04-19T13:46:11Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "body": "Tracking list of things to do if we ever made a dplyr \"edition\"\r\n\r\n* change default summarise behaviour\r\n* change default join behaviour (#5661)", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5661", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5661/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5661/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5661/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5661", #> "id": 770060982, #> "node_id": "MDU6SXNzdWU3NzAwNjA5ODI=", #> "number": 5661, #> "title": "give `*_join()` more control on duplicated and unmatched rows", #> "user": { #> "login": "mgirlich", #> "id": 18258854, #> "node_id": "MDQ6VXNlcjE4MjU4ODU0", #> "avatar_url": "https://avatars.githubusercontent.com/u/18258854?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/mgirlich", #> "html_url": "https://github.com/mgirlich", #> "followers_url": "https://api.github.com/users/mgirlich/followers", #> "following_url": "https://api.github.com/users/mgirlich/following{/other_user}", #> "gists_url": "https://api.github.com/users/mgirlich/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/mgirlich/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/mgirlich/subscriptions", #> "organizations_url": "https://api.github.com/users/mgirlich/orgs", #> "repos_url": "https://api.github.com/users/mgirlich/repos", #> "events_url": "https://api.github.com/users/mgirlich/events{/privacy}", #> "received_events_url": "https://api.github.com/users/mgirlich/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 17708200, #> "node_id": "MDU6TGFiZWwxNzcwODIwMA==", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/feature", #> "name": "feature", #> "color": "B4C3AE", #> "default": false, #> "description": "a feature request or enhancement" #> }, #> { #> "id": 1257707950, #> "node_id": "MDU6TGFiZWwxMjU3NzA3OTUw", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/join%20:twisted_rightwards_arrows:", #> "name": "join :twisted_rightwards_arrows:", #> "color": "eeeeee", #> "default": false, #> "description": "Related to joins" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 2, #> "created_at": "2020-12-17T13:56:24Z", #> "updated_at": "2021-01-11T16:08:07Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "As @lionel- nicely proposed in #3967 it would be great to have more control on what the `*_join()` functions do on duplicated or unmatched rows. Proposed arguments:\r\n\r\n* `.unmatched = c(\"keep\", \"drop\", \"error\")`\r\n* `.duplicates = c(\"error\", \"product\")`\r\n\r\nfor example a 1:1 join would then simply be `.unmatched = \"error\"` and `.duplicates = \"error\"`.\r\n\r\nAs the arguments should rather be added to the existing `*_join()` functions the \"keep\" and \"drop\" options for `.unmatched` don't really make sense for all joins. Rather, one would have\r\n\r\n`left/right/full_join()` -> `.unmatched = c(\"keep\", \"error\")`\r\n`inner_join()` -> `.unmatched = c(\"drop\", \"error\")`", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5638", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5638/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5638/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5638/events", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5638", #> "id": 757018663, #> "node_id": "MDExOlB1bGxSZXF1ZXN0NTMyNDYzODE5", #> "number": 5638, #> "title": "bundle() function for contiguous grouping", #> "user": { #> "login": "romainfrancois", #> "id": 2625526, #> "node_id": "MDQ6VXNlcjI2MjU1MjY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2625526?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/romainfrancois", #> "html_url": "https://github.com/romainfrancois", #> "followers_url": "https://api.github.com/users/romainfrancois/followers", #> "following_url": "https://api.github.com/users/romainfrancois/following{/other_user}", #> "gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 4, #> "created_at": "2020-12-04T11:11:27Z", #> "updated_at": "2020-12-07T15:11:22Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "pull_request": { #> "url": "https://api.github.com/repos/tidyverse/dplyr/pulls/5638", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5638", #> "diff_url": "https://github.com/tidyverse/dplyr/pull/5638.diff", #> "patch_url": "https://github.com/tidyverse/dplyr/pull/5638.patch" #> }, #> "body": "This has been discussed many times, incl #5184 and dplyr went back and forth about what `group_by()` does. \r\n\r\nCurrently`group_by()` does not reorder rows, it only adds extra information so that further operations are done \"by groups\". This is considered a feature and it probably can't change. One of the nice properties is that if we group `tbl` then ungroup it, we end up with the same data. \r\n\r\nOTOH, having data bundled by group (because \"grouped by group\" is awkward) also has nice properties. In terms of performance, having all data for a single group \"together\" will improve locality, and with a little altrep where applicable, it could also be more memory efficient. \r\n\r\nTo kickstart the experiment, here is `bundle()` a function that takes a grouped data frame and returns a grouped data frame that has the property of having its data contiguous: \r\n\r\n``` r\r\nlibrary(dplyr, warn.conflicts = FALSE)\r\n\r\ndf <- data.frame(g = rep(1:2, 3), x = 1:6)\r\ndf %>% group_by(g)\r\n#> # A tibble: 6 x 2\r\n#> # Groups: g [2]\r\n#> g x\r\n#> <int> <int>\r\n#> 1 1 1\r\n#> 2 2 2\r\n#> 3 1 3\r\n#> 4 2 4\r\n#> 5 1 5\r\n#> 6 2 6\r\ndf %>% group_by(g) %>% bundle()\r\n#> # A tibble: 6 x 2\r\n#> # Groups: g [2]\r\n#> g x\r\n#> <int> <int>\r\n#> 1 1 1\r\n#> 2 1 3\r\n#> 3 1 5\r\n#> 4 2 2\r\n#> 5 2 4\r\n#> 6 2 6\r\n```\r\n\r\n<sup>Created on 2020-12-04 by the [reprex package](https://reprex.tidyverse.org) (v0.3.0.9001)<\/sup>\r\n\r\nWe could imagine a `bundle_by()` shortcut, initially simply implemented as: `bundle_by <- function(.data, ...) bundle(group_by(.data, ...))`, but that perhaps could be internally done differently. \r\n\r\nThis is an initial version, and some of the code should probably be internalized, i.e. this feels like something better suited for C++: \r\n\r\n```r\r\nbreaks <- cumsum(c(1L, list_sizes(old_rows)))\r\n start <- breaks[-length(breaks)]\r\n end <- breaks[-1] - 1L\r\n new_groups$.rows <- new_list_of(\r\n map2(start, end, seq2),\r\n ptype = integer(),\r\n class = \"bundled_indices\"\r\n )\r\n```\r\n\r\n`bundle()` creates a grouped data frame that is entirely compatible with all operations. It only adds: \r\n\r\n - the `\"bundled_df\"` class in addition to `\"grouped_df\"` \r\n - the `\"bundled_indices\"` class marks the `.rows` columns of the `groups` attribute. \r\n\r\nThe idea being that `vec_chop()` (used in `DataMask` internal code to create the promises for each of the columns) could recognize `\"bundled_indices\"` and use it, i.e. for the columns where altrep is possible, it could create a list of views instead of a list of materialized vectors. views would only need to store the original vector, start and end positions (the altrep implies could very easily implement `DATAPTR()`). \r\n\r\nFor now, we can expect the cost of `bundle()` to be dominated by `vec_slice(.data, indices)` but then again maybe that can be made lazy with altrep too, so that we would not pay for slicing a column that we later not use. \r\n\r\n@DavisVaughan @lionel- can you see a `vec_chop(x, <bundled_indices>) -> list of views of x` ?\r\n\r\n\"bundling\" could also be an argument of `group_by()` but it feels less of an active choice from the user ?\r\n\r\n`summarise()` already conceptually makes bundled data frames, they could be marked as such. ", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5617", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5617/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5617/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5617/events", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5617", #> "id": 747351361, #> "node_id": "MDExOlB1bGxSZXF1ZXN0NTI0NTg4OTk1", #> "number": 5617, #> "title": "rethrow shiny errors as is, instead of promoting them like other errors.", #> "user": { #> "login": "romainfrancois", #> "id": 2625526, #> "node_id": "MDQ6VXNlcjI2MjU1MjY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2625526?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/romainfrancois", #> "html_url": "https://github.com/romainfrancois", #> "followers_url": "https://api.github.com/users/romainfrancois/followers", #> "following_url": "https://api.github.com/users/romainfrancois/following{/other_user}", #> "gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 1, #> "created_at": "2020-11-20T09:58:15Z", #> "updated_at": "2020-11-20T16:00:52Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "pull_request": { #> "url": "https://api.github.com/repos/tidyverse/dplyr/pulls/5617", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5617", #> "diff_url": "https://github.com/tidyverse/dplyr/pull/5617.diff", #> "patch_url": "https://github.com/tidyverse/dplyr/pull/5617.patch" #> }, #> "body": "closes #5552\r\n\r\nBecause we catch and improve errors in all `dplyr` verbs, some `shiny` errors don't interrupt the flow the way they are expected to. \r\n\r\nNot sure this is the only error we should consider. cc @wch\r\n\r\nAlternatively, we could re-add the `shiny.silent.error` class to the error we create. \r\n\r\nMore generally, should we do something to preserve the class and/or other parts of the errors we rebrand ?", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5588", #> "repository_url": 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"gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 5, #> "created_at": "2020-11-04T17:20:40Z", #> "updated_at": "2021-05-12T20:58:20Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "pull_request": { #> "url": "https://api.github.com/repos/tidyverse/dplyr/pulls/5588", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5588", #> "diff_url": "https://github.com/tidyverse/dplyr/pull/5588.diff", #> "patch_url": "https://github.com/tidyverse/dplyr/pull/5588.patch" #> }, #> "body": "I need to review the other functions, and understand better what they all do, but I think this is legit for #5553\r\n\r\n``` r\r\nlibrary(dplyr)\r\n\r\ndf1 <- tibble(x = c(1, 1, 2), y = c(2, 3, 5))\r\ndf2 <- tibble(x = 1, y = 4)\r\nrows_update(df1, df2, by = \"x\")\r\n#> # A tibble: 3 x 2\r\n#> x y\r\n#> <dbl> <dbl>\r\n#> 1 1 4\r\n#> 2 1 4\r\n#> 3 2 5\r\n```\r\n\r\n<sup>Created on 2020-11-04 by the [reprex package](https://reprex.tidyverse.org) (v0.3.0.9001)<\/sup>", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5573", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": 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", #> "creator": { #> "login": "romainfrancois", #> "id": 2625526, #> "node_id": "MDQ6VXNlcjI2MjU1MjY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2625526?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/romainfrancois", #> "html_url": "https://github.com/romainfrancois", #> "followers_url": "https://api.github.com/users/romainfrancois/followers", #> "following_url": "https://api.github.com/users/romainfrancois/following{/other_user}", #> "gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> }, #> "open_issues": 9, #> "closed_issues": 4, #> "state": "open", #> "created_at": "2020-03-22T09:33:34Z", #> "updated_at": "2021-04-09T08:45:16Z", #> "due_on": {}, #> "closed_at": {} #> }, #> "comments": 4, #> "created_at": "2020-10-26T16:51:26Z", #> "updated_at": "2020-11-16T18:05:24Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "body": "They shouldn't be needed anymore, and they make the error messages unnecessarily confusing. (Have been deprecated since 0.7.0 released June 2017)", #> "performed_via_github_app": {} #> } #> ]gh("/repos/{owner}/{repo}/issues", owner = "hadley", repo = "dplyr")#> [ #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5886", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5886/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5886/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5886/events", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5886", #> "id": 893313050, #> "node_id": "MDExOlB1bGxSZXF1ZXN0NjQ1ODQ3ODc0", #> "number": 5886, #> "title": "use the formula environment as the newly created quosure environment.", #> "user": { #> "login": "romainfrancois", #> "id": 2625526, #> "node_id": "MDQ6VXNlcjI2MjU1MjY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2625526?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/romainfrancois", #> "html_url": "https://github.com/romainfrancois", #> "followers_url": "https://api.github.com/users/romainfrancois/followers", #> "following_url": "https://api.github.com/users/romainfrancois/following{/other_user}", #> "gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": { #> "url": "https://api.github.com/repos/tidyverse/dplyr/milestones/29", #> "html_url": "https://github.com/tidyverse/dplyr/milestone/29", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/milestones/29/labels", #> "id": 6764658, #> "node_id": "MDk6TWlsZXN0b25lNjc2NDY1OA==", #> "number": 29, #> "title": "1.0.7", #> "description": "", #> "creator": { #> "login": "romainfrancois", #> "id": 2625526, #> "node_id": "MDQ6VXNlcjI2MjU1MjY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2625526?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/romainfrancois", #> "html_url": "https://github.com/romainfrancois", #> "followers_url": "https://api.github.com/users/romainfrancois/followers", #> "following_url": "https://api.github.com/users/romainfrancois/following{/other_user}", #> "gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": 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"https://github.com/tidyverse/dplyr/pull/5886", #> "diff_url": "https://github.com/tidyverse/dplyr/pull/5886.diff", #> "patch_url": "https://github.com/tidyverse/dplyr/pull/5886.patch" #> }, #> "body": "closes #5881\r\n\r\n``` r\r\n# pak::pak(\"msberends/AMR@v1.6.0\")\r\nlibrary(AMR)\r\nlibrary(skimr)\r\n\r\nskim(example_isolates)\r\n```\r\n\r\n| | |\r\n| :----------------------------------------------- | :---------------- |\r\n| Name | example\\_isolates |\r\n| Number of rows | 2000 |\r\n| Number of columns | 49 |\r\n| \\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_ | |\r\n| Column type frequency: | |\r\n| character | 2 |\r\n| Date | 1 |\r\n| factor | 1 |\r\n| logical | 3 |\r\n| mo | 1 |\r\n| numeric | 1 |\r\n| rsi | 40 |\r\n| \\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_\\_ | |\r\n| Group variables | None |\r\n\r\nData summary\r\n\r\n**Variable type: character**\r\n\r\n| skim\\_variable | n\\_missing | complete\\_rate | min | max | empty | n\\_unique | whitespace |\r\n| :------------- | ---------: | -------------: | --: | --: | ----: | --------: | ---------: |\r\n| gender | 0 | 1 | 1 | 1 | 0 | 2 | 0 |\r\n| patient\\_id | 0 | 1 | 6 | 6 | 0 | 981 | 0 |\r\n\r\n**Variable type: Date**\r\n\r\n| skim\\_variable | n\\_missing | complete\\_rate | min | max | median | n\\_unique |\r\n| :------------- | ---------: | -------------: | :--------- | :--------- | :--------- | --------: |\r\n| date | 0 | 1 | 2002-01-02 | 2017-12-28 | 2009-07-31 | 1140 |\r\n\r\n**Variable type: factor**\r\n\r\n| skim\\_variable | n\\_missing | complete\\_rate | ordered | n\\_unique | top\\_counts |\r\n| :------------- | ---------: | -------------: | :------ | --------: | :----------------------------- |\r\n| hospital\\_id | 0 | 1 | FALSE | 4 | D: 762, B: 663, A: 321, C: 254 |\r\n\r\n**Variable type: logical**\r\n\r\n| skim\\_variable | n\\_missing | complete\\_rate | mean | count |\r\n| :--------------- | ---------: | -------------: | ---: | :------------------ |\r\n| ward\\_icu | 0 | 1 | 0.32 | FAL: 1354, TRU: 646 |\r\n| ward\\_clinical | 0 | 1 | 0.73 | TRU: 1464, FAL: 536 |\r\n| ward\\_outpatient | 0 | 1 | 0.06 | FAL: 1880, TRU: 120 |\r\n\r\n**Variable type: mo**\r\n\r\n| skim\\_variable | n\\_missing | complete\\_rate | unique\\_total | gram\\_negative | gram\\_positive | top\\_genus | top\\_species |\r\n| :------------- | ---------: | -------------: | ------------: | -------------: | -------------: | :------------- | :--------------- |\r\n| mo | 0 | 1 | 90 | NA | NA | Staphylococcus | Escherichia coli |\r\n\r\n**Variable type: numeric**\r\n\r\n| skim\\_variable | n\\_missing | complete\\_rate | mean | sd | p0 | p25 | p50 | p75 | p100 | hist |\r\n| :------------- | ---------: | -------------: | ----: | ----: | -: | --: | --: | --: | ---: | :---- |\r\n| age | 0 | 1 | 71.06 | 14.12 | 14 | 63 | 74 | 82 | 97 | ▁▁▃▇▅ |\r\n\r\n**Variable type: rsi**\r\n\r\n| skim\\_variable | n\\_missing | complete\\_rate | ab\\_name | count\\_R | count\\_S | count\\_I | prop\\_R | prop\\_S | prop\\_I |\r\n| :------------- | ---------: | -------------: | :------- | -------: | -------: | -------: | ------: | ------: | ------: |\r\n| PEN | 371 | 0.81 | NA | 1201 | 428 | 11 | 0.74 | 0.26 | 0.01 |\r\n| OXA | 1635 | 0.18 | NA | 114 | 251 | 0 | 0.31 | 0.69 | 0.00 |\r\n| FLC | 1057 | 0.47 | NA | 278 | 665 | 0 | 0.29 | 0.71 | 0.00 |\r\n| AMX | 650 | 0.68 | NA | 804 | 546 | 3 | 0.60 | 0.40 | 0.00 |\r\n| AMC | 121 | 0.94 | NA | 446 | 1433 | 91 | 0.24 | 0.76 | 0.05 |\r\n| AMP | 650 | 0.68 | NA | 804 | 546 | 3 | 0.60 | 0.40 | 0.00 |\r\n| TZP | 999 | 0.50 | NA | 126 | 875 | 13 | 0.13 | 0.87 | 0.01 |\r\n| CZO | 1554 | 0.22 | NA | 199 | 247 | 2 | 0.45 | 0.55 | 0.00 |\r\n| FEP | 1276 | 0.36 | NA | 103 | 621 | 1 | 0.14 | 0.86 | 0.00 |\r\n| CXM | 211 | 0.89 | NA | 470 | 1319 | 22 | 0.26 | 0.74 | 0.01 |\r\n| FOX | 1182 | 0.41 | NA | 224 | 594 | 8 | 0.27 | 0.73 | 0.01 |\r\n| CTX | 1057 | 0.47 | NA | 146 | 797 | 1 | 0.15 | 0.85 | 0.00 |\r\n| CAZ | 189 | 0.91 | NA | 1204 | 607 | 0 | 0.66 | 0.34 | 0.00 |\r\n| CRO | 1057 | 0.47 | NA | 146 | 797 | 1 | 0.15 | 0.85 | 0.00 |\r\n| GEN | 145 | 0.93 | NA | 456 | 1399 | 27 | 0.25 | 0.75 | 0.01 |\r\n| TOB | 649 | 0.68 | NA | 465 | 886 | 7 | 0.34 | 0.66 | 0.01 |\r\n| AMK | 1308 | 0.35 | NA | 441 | 251 | 0 | 0.64 | 0.36 | 0.00 |\r\n| KAN | 1529 | 0.24 | NA | 471 | 0 | 0 | 1.00 | 0.00 | 0.00 |\r\n| TMP | 501 | 0.75 | NA | 571 | 928 | 10 | 0.38 | 0.62 | 0.01 |\r\n| SXT | 241 | 0.88 | NA | 361 | 1398 | 6 | 0.21 | 0.79 | 0.00 |\r\n| NIT | 1257 | 0.37 | NA | 127 | 616 | 51 | 0.17 | 0.83 | 0.07 |\r\n| FOS | 1649 | 0.18 | NA | 148 | 203 | 0 | 0.42 | 0.58 | 0.00 |\r\n| LNZ | 977 | 0.51 | NA | 709 | 314 | 0 | 0.69 | 0.31 | 0.00 |\r\n| CIP | 591 | 0.70 | NA | 228 | 1181 | 69 | 0.16 | 0.84 | 0.05 |\r\n| MFX | 1789 | 0.11 | NA | 71 | 140 | 4 | 0.34 | 0.66 | 0.02 |\r\n| VAN | 139 | 0.93 | NA | 712 | 1149 | 0 | 0.38 | 0.62 | 0.00 |\r\n| TEC | 1024 | 0.49 | NA | 739 | 237 | 0 | 0.76 | 0.24 | 0.00 |\r\n| TCY | 800 | 0.60 | NA | 357 | 843 | 23 | 0.30 | 0.70 | 0.02 |\r\n| TGC | 1202 | 0.40 | NA | 101 | 697 | 0 | 0.13 | 0.87 | 0.00 |\r\n| DOX | 864 | 0.57 | NA | 315 | 821 | 7 | 0.28 | 0.72 | 0.01 |\r\n| ERY | 106 | 0.95 | NA | 1084 | 810 | 9 | 0.57 | 0.43 | 0.00 |\r\n| CLI | 480 | 0.76 | NA | 930 | 590 | 4 | 0.61 | 0.39 | 0.00 |\r\n| AZM | 106 | 0.95 | NA | 1084 | 810 | 9 | 0.57 | 0.43 | 0.00 |\r\n| IPM | 1111 | 0.44 | NA | 55 | 834 | 10 | 0.06 | 0.94 | 0.01 |\r\n| MEM | 1171 | 0.41 | NA | 49 | 780 | 0 | 0.06 | 0.94 | 0.00 |\r\n| MTR | 1966 | 0.02 | NA | 5 | 29 | 0 | 0.15 | 0.85 | 0.00 |\r\n| CHL | 1846 | 0.08 | NA | 33 | 121 | 0 | 0.21 | 0.79 | 0.00 |\r\n| COL | 360 | 0.82 | NA | 1331 | 309 | 0 | 0.81 | 0.19 | 0.00 |\r\n| MUP | 1730 | 0.14 | NA | 16 | 254 | 3 | 0.06 | 0.94 | 0.01 |\r\n| RIF | 997 | 0.50 | NA | 698 | 305 | 2 | 0.70 | 0.30 | 0.00 |\r\n\r\n<sup>Created on 2021-05-17 by the [reprex package](https://reprex.tidyverse.org) (v2.0.0)<\/sup>", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5885", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5885/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5885/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5885/events", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5885", #> "id": 893140583, #> "node_id": "MDExOlB1bGxSZXF1ZXN0NjQ1NzA0NDM5", #> "number": 5885, #> "title": "making sure key_deparse() returns a single string", #> "user": { #> "login": "romainfrancois", #> "id": 2625526, #> "node_id": "MDQ6VXNlcjI2MjU1MjY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2625526?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/romainfrancois", #> "html_url": "https://github.com/romainfrancois", #> "followers_url": 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"https://github.com/tidyverse/dplyr/pull/5885.patch" #> }, #> "body": "closes #5883\r\n\r\noriginal example from #5883\r\n\r\n``` r\r\nlibrary(tidyverse)\r\n\r\nFOOBAR.df <- data.frame(matrix(rnorm(50), nrow = 10))\r\ncolnames(FOOBAR.df) <- c(\"Prevotella\", \"Streptococcus\", \"Gemella\", \"Rothia\", \"Haemophilus\")\r\nFOOBAR.df %>% \r\n rowwise() %>% \r\n transmute(sum(c_across(all_of(c(\"Prevotella\", \"Streptococcus\", \"Gemella\", \"Rothia\", \"Haemophilus\")))))\r\n#> # A tibble: 10 x 1\r\n#> # Rowwise: \r\n#> `sum(...)`\r\n#> <dbl>\r\n#> 1 0.673\r\n#> 2 3.51 \r\n#> 3 -0.463\r\n#> 4 -3.28 \r\n#> 5 -1.43 \r\n#> 6 -2.56 \r\n#> 7 -4.42 \r\n#> 8 -2.06 \r\n#> 9 0.473\r\n#> 10 0.297\r\n```\r\n\r\n<sup>Created on 2021-05-17 by the [reprex package](https://reprex.tidyverse.org) (v2.0.0)<\/sup>", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5883", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> 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[ #> { #> "login": "romainfrancois", #> "id": 2625526, #> "node_id": "MDQ6VXNlcjI2MjU1MjY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2625526?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/romainfrancois", #> "html_url": "https://github.com/romainfrancois", #> "followers_url": "https://api.github.com/users/romainfrancois/followers", #> "following_url": "https://api.github.com/users/romainfrancois/following{/other_user}", #> "gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> } #> ], #> "milestone": { #> "url": "https://api.github.com/repos/tidyverse/dplyr/milestones/29", #> "html_url": "https://github.com/tidyverse/dplyr/milestone/29", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/milestones/29/labels", #> "id": 6764658, #> "node_id": "MDk6TWlsZXN0b25lNjc2NDY1OA==", #> "number": 29, #> "title": "1.0.7", #> "description": "", #> "creator": { #> "login": "romainfrancois", #> "id": 2625526, #> "node_id": "MDQ6VXNlcjI2MjU1MjY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2625526?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/romainfrancois", #> "html_url": "https://github.com/romainfrancois", #> "followers_url": "https://api.github.com/users/romainfrancois/followers", #> "following_url": "https://api.github.com/users/romainfrancois/following{/other_user}", #> "gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> }, #> "open_issues": 6, #> "closed_issues": 0, #> "state": "open", #> "created_at": "2021-05-17T09:31:45Z", #> "updated_at": "2021-05-17T14:15:40Z", #> "due_on": {}, #> "closed_at": {} #> }, #> "comments": 0, #> "created_at": "2021-05-13T03:45:50Z", #> "updated_at": "2021-05-17T09:32:01Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "``all_of`` or ``c_across`` function cannot help tidyselect a set of variables according to a particular set of strings. This is a really really weird error and please see my demo below. Thank you! \r\n\r\n``` r\r\nlibrary(tidyverse)\r\n\r\n### Behavior of tidy-select is changed after 1.0.6 release of dplyr. \r\n### If all_of function has been modified, it would be likely that all_of is causing the problem below. \r\n\r\n# Generate a random dataset with colname A, B, C, D, E\r\nFOOBAR.df <- data.frame(matrix(rnorm(50), nrow = 10)) %>% `colnames<-`(LETTERS[1:5])\r\n\r\n# Usually if you want the rowSums, c_across, all_of and a vector of string always did the trick when version <= 1.0.5\r\n\r\nFOOBAR.df %>% rowwise() %>% transmute(sum(c_across(all_of(c(\"A\", \"B\", \"C\", \"D\", \"E\")))))\r\n#> # A tibble: 10 x 1\r\n#> # Rowwise: \r\n#> `sum(c_across(all_of(c(\"A\", \"B\", \"C\", \"D\", \"E\"))))`\r\n#> <dbl>\r\n#> 1 -0.967 \r\n#> 2 -0.168 \r\n#> 3 0.0993\r\n#> 4 -0.959 \r\n#> 5 -2.26 \r\n#> 6 -4.41 \r\n#> 7 1.48 \r\n#> 8 -0.261 \r\n#> 9 2.16 \r\n#> 10 -3.38\r\n\r\n# But I got an error specific to the vector string of colname I was using in my dataset, thus I am typing in exactly what I used when this error occurred\r\ncolnames(FOOBAR.df) <- c(\"Prevotella\", \"Streptococcus\", \"Gemella\", \"Rothia\", \"Haemophilus\")\r\n\r\n# Try to get the row sum of all the variables in the vector of string, will result in an error. \r\nFOOBAR.df %>% rowwise() %>% transmute(sum(c_across(all_of(c(\"Prevotella\", \"Streptococcus\", \"Gemella\", \"Rothia\", \"Haemophilus\"))))) #%>% tryCatch(error = function(e) \"no such index at level 1\") \r\n#> Error: Problem with `mutate()` input `..1`.\r\n#> ℹ `..1 = sum(...)`.\r\n#> x no such index at level 1\r\n#> \r\n#> ℹ The error occurred in row 1.\r\n\r\n# Why I said that this error seems to be particularly to the vector string of colname? I've tried the following tests: \r\n\r\n# a) Replace a spelling, for example I shall spell \"Prevotella\", the first element in previous colname, as \"Prevotela\" with only 1 l and it works fine\r\n\r\ncolnames(FOOBAR.df) <- c(\"Prevotela\", \"Streptococcus\", \"Gemella\", \"Rothia\", \"Haemophilus\")\r\nFOOBAR.df %>% rowwise() %>% transmute(sum(c_across(all_of(c(\"Prevotela\", \"Streptococcus\", \"Gemella\", \"Rothia\", \"Haemophilus\")))))\r\n#> # A tibble: 10 x 1\r\n#> # Rowwise: \r\n#> `sum(...)`\r\n#> <dbl>\r\n#> 1 -0.967 \r\n#> 2 -0.168 \r\n#> 3 0.0993\r\n#> 4 -0.959 \r\n#> 5 -2.26 \r\n#> 6 -4.41 \r\n#> 7 1.48 \r\n#> 8 -0.261 \r\n#> 9 2.16 \r\n#> 10 -3.38\r\n\r\n# b) Removing one or some elements off that string and it works just fine \r\n\r\nFOOBAR.df %>% rowwise() %>% transmute(sum(c_across(all_of(c(\"Streptococcus\", \"Gemella\", \"Rothia\", \"Haemophilus\")))))\r\n#> # A tibble: 10 x 1\r\n#> # Rowwise: \r\n#> `sum(c_across(all_of(c(\"Streptococcus\", \"Gemella\", \"Rothia\", \"Haemophilus\"))…\r\n#> <dbl>\r\n#> 1 -1.60 \r\n#> 2 -1.10 \r\n#> 3 -0.0986\r\n#> 4 -0.576 \r\n#> 5 -1.25 \r\n#> 6 -4.27 \r\n#> 7 1.96 \r\n#> 8 0.491 \r\n#> 9 1.44 \r\n#> 10 -2.45\r\n\r\n# c) Wrap the string I was using into a vector, and feed the name of the vector as parameter of all_of, and it also works fine\r\n\r\ntest_colname_vec <- c(\"Prevotella\", \"Streptococcus\", \"Gemella\", \"Rothia\", \"Haemophilus\")\r\ncolnames(FOOBAR.df) <- test_colname_vec\r\nFOOBAR.df %>% rowwise() %>% transmute(sum(c_across(all_of(test_colname_vec))))\r\n#> # A tibble: 10 x 1\r\n#> # Rowwise: \r\n#> `sum(c_across(all_of(test_colname_vec)))`\r\n#> <dbl>\r\n#> 1 -0.967 \r\n#> 2 -0.168 \r\n#> 3 0.0993\r\n#> 4 -0.959 \r\n#> 5 -2.26 \r\n#> 6 -4.41 \r\n#> 7 1.48 \r\n#> 8 -0.261 \r\n#> 9 2.16 \r\n#> 10 -3.38\r\n\r\n# In summary, it seems to be an error related to how 'all_of' or 'c_across' deal with string vector as input parameter, \r\n# and is also likely sensitive to the content and length of string. This is really confusing, and the same code had zero problem in a 1.0.5 dplyr env\r\n# FYI, I am also listing the version of R I was using below: \r\nversion[c(\"system\", \"version.string\")]\r\n#> _ \r\n#> system x86_64, darwin15.6.0 \r\n#> version.string R version 3.6.2 (2019-12-12)\r\n```\r\n\r\n<sup>Created on 2021-05-12 by the [reprex package](https://reprex.tidyverse.org) (v2.0.0)<\/sup>\r\n", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5881", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5881/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5881/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5881/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5881", #> "id": 884636978, #> "node_id": "MDU6SXNzdWU4ODQ2MzY5Nzg=", #> "number": 5881, #> "title": "Changes in how internal functions are handled in across() breaks AMR", #> "user": { #> "login": "michaelquinn32", #> "id": 3473921, #> "node_id": "MDQ6VXNlcjM0NzM5MjE=", #> "avatar_url": "https://avatars.githubusercontent.com/u/3473921?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/michaelquinn32", #> "html_url": "https://github.com/michaelquinn32", #> "followers_url": "https://api.github.com/users/michaelquinn32/followers", #> "following_url": "https://api.github.com/users/michaelquinn32/following{/other_user}", #> "gists_url": "https://api.github.com/users/michaelquinn32/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/michaelquinn32/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/michaelquinn32/subscriptions", #> "organizations_url": "https://api.github.com/users/michaelquinn32/orgs", #> "repos_url": "https://api.github.com/users/michaelquinn32/repos", #> "events_url": 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"2021-05-10T16:53:32Z", #> "updated_at": "2021-05-17T16:56:47Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "Hi team!\r\n\r\nThis was originally reported in ropensci/skimr/issues/664, but I'm not fully certain how to address it there.\r\n\r\nThe user defines their own `skimr` summary functions in a package, some of these functions are internal:\r\nhttps://github.com/msberends/AMR/blob/551f99dc8fa6278b0a5bb5670153438e88135dec/R/aa_helper_pm_functions.R#L566\r\n\r\nAfter updating to dplyr 1.0.6, their checks on CRAN on failing.\r\nhttps://cran.r-project.org/web/checks/check_results_AMR.html\r\n\r\nPlease let me know if this is a `skimr` issue, and I can update accordingly.\r\n\r\nThanks for everything!\r\n\r\ncc: @msberends", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5880", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": 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"labels_url": "https://api.github.com/repos/tidyverse/dplyr/milestones/29/labels", #> "id": 6764658, #> "node_id": "MDk6TWlsZXN0b25lNjc2NDY1OA==", #> "number": 29, #> "title": "1.0.7", #> "description": "", #> "creator": { #> "login": "romainfrancois", #> "id": 2625526, #> "node_id": "MDQ6VXNlcjI2MjU1MjY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2625526?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/romainfrancois", #> "html_url": "https://github.com/romainfrancois", #> "followers_url": "https://api.github.com/users/romainfrancois/followers", #> "following_url": "https://api.github.com/users/romainfrancois/following{/other_user}", #> "gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> }, #> "open_issues": 6, #> "closed_issues": 0, #> "state": "open", #> "created_at": "2021-05-17T09:31:45Z", #> "updated_at": "2021-05-17T14:15:40Z", #> "due_on": {}, #> "closed_at": {} #> }, #> "comments": 0, #> "created_at": "2021-05-08T20:50:19Z", #> "updated_at": "2021-05-17T13:36:04Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "In the current documentation it is unclear as to how if_any() and if_all() are different. The current documentation describes the output of both functions to be the same. \r\n\r\nhttps://github.com/tidyverse/dplyr/blob/a763273ecbf52fb288901677ae5af3e6037ad77f/R/across.R#L9", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5877", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5877/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5877/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5877/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5877", #> "id": 878238441, #> "node_id": "MDU6SXNzdWU4NzgyMzg0NDE=", #> "number": 5877, #> "title": "Group_by / mutate drops attributes", #> "user": { #> "login": "traversc", #> "id": 9452194, #> "node_id": "MDQ6VXNlcjk0NTIxOTQ=", #> "avatar_url": "https://avatars.githubusercontent.com/u/9452194?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/traversc", #> "html_url": "https://github.com/traversc", #> "followers_url": "https://api.github.com/users/traversc/followers", #> "following_url": "https://api.github.com/users/traversc/following{/other_user}", #> "gists_url": "https://api.github.com/users/traversc/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/traversc/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/traversc/subscriptions", #> "organizations_url": "https://api.github.com/users/traversc/orgs", #> "repos_url": "https://api.github.com/users/traversc/repos", #> "events_url": "https://api.github.com/users/traversc/events{/privacy}", #> "received_events_url": "https://api.github.com/users/traversc/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 1, #> "created_at": "2021-05-07T00:29:41Z", #> "updated_at": "2021-05-17T14:09:21Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "Using group_by / mutate drops attributes from the data.frame. Can that be changed? \r\n\r\n```r\r\nlibrary(dplyr)\r\ndata(mtcars)\r\nattr(mtcars, \"test\") <- 1\r\n\r\n# Just mutate\r\nmtcars <- mtcars %>% mutate(x = 1)\r\nattr(mtcars, \"test\")\r\n# 1\r\n\r\n# Just group_by\r\nmtcars <- mtcars %>% group_by(cyl)\r\nattr(mtcars, \"test\")\r\n# 1\r\n\r\n# group_by mutate\r\nmtcars <- mtcars %>% mutate(gear = mean(gear))\r\nattr(mtcars, \"test\")\r\n# NULL\r\n```\r\n", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5875", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5875/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5875/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5875/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5875", #> "id": 877416528, #> "node_id": "MDU6SXNzdWU4Nzc0MTY1Mjg=", #> "number": 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"https://api.github.com/users/romainfrancois", #> "html_url": "https://github.com/romainfrancois", #> "followers_url": "https://api.github.com/users/romainfrancois/followers", #> "following_url": "https://api.github.com/users/romainfrancois/following{/other_user}", #> "gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> }, #> "open_issues": 6, #> "closed_issues": 0, #> "state": "open", #> "created_at": "2021-05-17T09:31:45Z", #> "updated_at": "2021-05-17T14:15:40Z", #> "due_on": {}, #> "closed_at": {} #> }, #> "comments": 0, #> "created_at": "2021-05-06T11:53:55Z", #> "updated_at": "2021-05-17T14:15:40Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "body": "I think (to be consistent with `summarise.data.frame`) that this shouldn't message?\r\n\r\n``` r\r\nlibrary(dplyr, warn.conflicts = FALSE)\r\n\r\ndf <- tibble(\r\n x = 1:3,\r\n y = c(\"a\", \"d,e,f\", \"g,h\"),\r\n z = c(\"1\", \"2,3,4\", \"5,6\")\r\n)\r\n\r\ny <- df %>% \r\n rowwise() %>% \r\n summarise(n = length(x))\r\n#> `summarise()` has ungrouped output. You can override using the `.groups` argument.\r\n```\r\n\r\n<sup>Created on 2021-05-06 by the [reprex package](https://reprex.tidyverse.org) (v2.0.0)<\/sup>", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5874", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5874/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5874/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5874/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5874", #> "id": 877415815, #> "node_id": "MDU6SXNzdWU4Nzc0MTU4MTU=", #> "number": 5874, #> "title": "Multi-row mutate outputs", #> "user": { #> "login": "hadley", #> "id": 4196, #> "node_id": "MDQ6VXNlcjQxOTY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/4196?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/hadley", #> "html_url": "https://github.com/hadley", #> "followers_url": "https://api.github.com/users/hadley/followers", #> "following_url": "https://api.github.com/users/hadley/following{/other_user}", #> "gists_url": "https://api.github.com/users/hadley/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/hadley/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/hadley/subscriptions", #> "organizations_url": "https://api.github.com/users/hadley/orgs", #> "repos_url": "https://api.github.com/users/hadley/repos", #> "events_url": "https://api.github.com/users/hadley/events{/privacy}", #> "received_events_url": "https://api.github.com/users/hadley/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 0, #> "created_at": "2021-05-06T11:53:04Z", #> "updated_at": "2021-05-06T11:53:04Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "body": "It's currently hard to turn a column value into multiple rows. Should this be a single verb? \r\n\r\n``` r\r\nlibrary(dplyr, warn.conflicts = FALSE)\r\nlibrary(stringr)\r\n\r\ndf <- tibble(\r\n x = 1:3,\r\n y = c(\"a\", \"d,e,f\", \"g,h\"),\r\n z = c(\"1\", \"2,3,4\", \"5,6\")\r\n)\r\n\r\ndf %>% \r\n rowwise() %>% \r\n summarise(x, y = str_split(y, \",\")[[1]], z)\r\n#> `summarise()` has ungrouped output. You can override using the `.groups` argument.\r\n#> # A tibble: 6 x 3\r\n#> x y z \r\n#> <int> <chr> <chr>\r\n#> 1 1 a 1 \r\n#> 2 2 d 2,3,4\r\n#> 3 2 e 2,3,4\r\n#> 4 2 f 2,3,4\r\n#> 5 3 g 5,6 \r\n#> 6 3 h 5,6\r\n\r\ndf %>% \r\n mutate(y = str_split(y, \",\")) %>% \r\n tidyr::unnest_longer(y)\r\n#> # A tibble: 6 x 3\r\n#> x y z \r\n#> <int> <chr> <chr>\r\n#> 1 1 a 1 \r\n#> 2 2 d 2,3,4\r\n#> 3 2 e 2,3,4\r\n#> 4 2 f 2,3,4\r\n#> 5 3 g 5,6 \r\n#> 6 3 h 5,6\r\n```\r\n\r\n<sup>Created on 2021-05-06 by the [reprex package](https://reprex.tidyverse.org) (v2.0.0)<\/sup>", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5868", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5868/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5868/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5868/events", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5868", #> "id": 870236721, #> "node_id": "MDExOlB1bGxSZXF1ZXN0NjI1NDY1MDU0", #> "number": 5868, #> "title": "Add a `.locale` argument to `arrange()` and use radix ordering", #> "user": { #> "login": "DavisVaughan", #> "id": 19150088, #> "node_id": "MDQ6VXNlcjE5MTUwMDg4", #> "avatar_url": "https://avatars.githubusercontent.com/u/19150088?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/DavisVaughan", #> "html_url": "https://github.com/DavisVaughan", #> "followers_url": "https://api.github.com/users/DavisVaughan/followers", #> "following_url": "https://api.github.com/users/DavisVaughan/following{/other_user}", #> "gists_url": "https://api.github.com/users/DavisVaughan/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/DavisVaughan/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/DavisVaughan/subscriptions", #> "organizations_url": "https://api.github.com/users/DavisVaughan/orgs", #> "repos_url": "https://api.github.com/users/DavisVaughan/repos", #> "events_url": "https://api.github.com/users/DavisVaughan/events{/privacy}", #> "received_events_url": "https://api.github.com/users/DavisVaughan/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 0, #> "created_at": "2021-04-28T18:37:06Z", #> "updated_at": "2021-04-30T12:37:08Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "pull_request": { #> "url": "https://api.github.com/repos/tidyverse/dplyr/pulls/5868", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5868", #> "diff_url": "https://github.com/tidyverse/dplyr/pull/5868.diff", #> "patch_url": "https://github.com/tidyverse/dplyr/pull/5868.patch" #> }, #> "body": "Closes #5090 \r\nPart of #5808 \r\n\r\nRequires this vctrs PR https://github.com/r-lib/vctrs/pull/1375\r\n\r\nThe above vctrs PR switches `vec_order()` to always use radix ordering. This propagates through to dplyr in 3 places:\r\n\r\n- `arrange()`\r\n- `group_by()`\r\n- `with_order()`\r\n\r\nThis PR tackles `arrange()` by providing a new `.locale` argument with 3 possibilities:\r\n\r\n- `NULL`, the default, for C locale\r\n- A single string, like `\"en_US\"`, to use a specific locale, backed by and requiring stringi\r\n- A formula/function to generate the sort key (i.e. `stringi::stri_sort_key()`, or `tolower()`)\r\n\r\nThis PR is currently focused on the implementation, I've left TODOs for the news bullet and for documentation of locale handling.\r\n\r\nThe snapshot tests are a little noisy. Dev vctrs requires dev rlang, which tweaked how deparsing with `~` works, changing a few snapshot tests here.\r\n\r\nBuild errors seem to be from the fact that rlang now exports ellipsis functions, causing some warnings\r\n\r\n---\r\n\r\nThis would be a meaningful breaking change, as the system locale is no longer being respected. However, there are multiple benefits from this change:\r\n- Sorting character vectors in the C locale is much much faster\r\n- Even generating a sort key and then sorting in the C locale is faster than the current approach\r\n- This removes dependence on an environment variable (LC_COLLATE), which we generally advocate in favor of explicitly specifying arguments. In other words, this gets us better consistency across platforms.\r\n- This increases consistency with data.table, who always uses the C locale\r\n- This increases consistency with stringi (and you could make an argument for stringr too)\r\n\r\nFor English, the biggest change is that uppercase letters now sort before any lowercase letters. Previously it used a natural ordering of `c(\"a\", \"A\", \"b\", \"B\")`.\r\n\r\nFor other languages, sorting directly in the C locale is often not very meaningful, so they would have to supply a locale identifier.", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5859", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5859/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5859/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5859/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5859", #> "id": 863392141, #> "node_id": "MDU6SXNzdWU4NjMzOTIxNDE=", #> "number": 5859, #> "title": "Programming vignette: Showcase the difference between `{` and `{{` in tidyeval glue strings", #> "user": { #> "login": "aviast", #> "id": 3517099, #> "node_id": "MDQ6VXNlcjM1MTcwOTk=", #> "avatar_url": "https://avatars.githubusercontent.com/u/3517099?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/aviast", #> "html_url": "https://github.com/aviast", #> "followers_url": "https://api.github.com/users/aviast/followers", #> "following_url": "https://api.github.com/users/aviast/following{/other_user}", #> "gists_url": "https://api.github.com/users/aviast/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/aviast/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/aviast/subscriptions", #> "organizations_url": "https://api.github.com/users/aviast/orgs", #> "repos_url": "https://api.github.com/users/aviast/repos", #> "events_url": "https://api.github.com/users/aviast/events{/privacy}", #> "received_events_url": "https://api.github.com/users/aviast/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 674867158, #> "node_id": "MDU6TGFiZWw2NzQ4NjcxNTg=", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/documentation", #> "name": "documentation", #> "color": "CBBAB8", #> "default": true, #> "description": "" #> }, #> { #> "id": 1157599135, #> "node_id": "MDU6TGFiZWwxMTU3NTk5MTM1", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/tidy-dev-day%20:nerd_face:", #> "name": "tidy-dev-day :nerd_face:", #> "color": "CBBAB8", #> "default": false, #> "description": "Tidyverse Developer Day rstd.io/tidy-dev-day" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 4, #> "created_at": "2021-04-21T02:32:23Z", #> "updated_at": "2021-04-22T08:15:15Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "When a new column is created with name calculated from an existing variable the new column name includes quote characters.\r\n\r\n```r\r\nlibrary(dplyr)\r\nfoo <- tibble(a = 1:10)\r\nprefix <- \"prefix\"\r\nbar <- mutate(foo, \"{{prefix}}_b\" := a + 1)\r\ncolnames(bar)\r\n```\r\nThe output is `[1] \"a\" \"\\\"prefix\\\"_b\"` and I would expect to see `[1] \"a\" \"prefix_b\"`\r\n", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5853", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5853/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5853/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5853/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5853", #> "id": 860590738, #> "node_id": "MDU6SXNzdWU4NjA1OTA3Mzg=", #> "number": 5853, #> "title": "<error/tibble_error_assign_columns_non_na_only> when trying to left_join", #> "user": { #> "login": "cschwab1", #> "id": 47124408, #> "node_id": "MDQ6VXNlcjQ3MTI0NDA4", #> "avatar_url": "https://avatars.githubusercontent.com/u/47124408?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/cschwab1", #> "html_url": "https://github.com/cschwab1", #> "followers_url": "https://api.github.com/users/cschwab1/followers", #> "following_url": "https://api.github.com/users/cschwab1/following{/other_user}", #> "gists_url": "https://api.github.com/users/cschwab1/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/cschwab1/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/cschwab1/subscriptions", #> "organizations_url": "https://api.github.com/users/cschwab1/orgs", #> "repos_url": "https://api.github.com/users/cschwab1/repos", #> "events_url": "https://api.github.com/users/cschwab1/events{/privacy}", #> "received_events_url": "https://api.github.com/users/cschwab1/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 334407164, #> "node_id": "MDU6TGFiZWwzMzQ0MDcxNjQ=", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/reprex", #> "name": "reprex", #> "color": "C5C295", #> "default": false, #> "description": "needs a minimal reproducible example" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 1, #> "created_at": "2021-04-18T06:54:19Z", #> "updated_at": "2021-04-19T13:18:38Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "Apologies in advance for not including a reproducible example, but I'm having some issues with dataframes in RStudio. This only started about 15 minutes ago, and previously working with these dataframes was fine, but now when I try to join two dataframes using `left_join(b09g, b11c, by=c(\"RAUMID\"))`, I get the error `Error: Can't use NA as column index in a tibble for assignment`. The full error using `rlang::last_error()` is pasted below: \r\n\r\n```\r\n<error/tibble_error_assign_columns_non_na_only>\r\nCan't use NA as column index in a tibble for assignment.\r\nBacktrace:\r\n █\r\n 1. ├─gentriclass(b09g) %>% left_join(., b11c, by = c(\"RAUMID\"))\r\n 2. ├─dplyr::left_join(., b11c, by = c(\"RAUMID\"))\r\n 3. └─dplyr:::left_join.data.frame(., b11c, by = c(\"RAUMID\"))\r\n 4. └─dplyr:::join_mutate(...)\r\n 5. ├─base::`[<-`(...)\r\n 6. └─tibble:::`[<-.tbl_df`(...)\r\n 7. └─tibble:::tbl_subassign(x, i, j, value, i_arg, j_arg, substitute(value))\r\n 8. └─tibble:::vectbl_as_new_col_index(j, x, value, j_arg, value_arg)\r\n\r\n```\r\n\r\nAdditionally, when I type df$var into the console for just a few select dataframes, a small error message appears next to the text saying `(TypeError) : cannot read property 'substr' of null`. \r\n\r\nI'm pretty new to R and Rstudio, and this hasn't ever happened before — I've tried updating both `tidyverse` and updating to the newest version of RStudio, but nothing seems to help. ", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5836", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5836/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5836/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5836/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5836", #> "id": 851378640, #> "node_id": "MDU6SXNzdWU4NTEzNzg2NDA=", #> "number": 5836, #> "title": "Programming with dplyr needs example of user supplied name for new variable", #> "user": { #> "login": "hadley", #> "id": 4196, #> "node_id": "MDQ6VXNlcjQxOTY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/4196?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/hadley", #> "html_url": "https://github.com/hadley", #> "followers_url": "https://api.github.com/users/hadley/followers", #> "following_url": "https://api.github.com/users/hadley/following{/other_user}", #> "gists_url": "https://api.github.com/users/hadley/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/hadley/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/hadley/subscriptions", #> "organizations_url": "https://api.github.com/users/hadley/orgs", #> "repos_url": "https://api.github.com/users/hadley/repos", #> "events_url": "https://api.github.com/users/hadley/events{/privacy}", #> "received_events_url": "https://api.github.com/users/hadley/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 674867158, #> "node_id": "MDU6TGFiZWw2NzQ4NjcxNTg=", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/documentation", #> "name": "documentation", #> "color": "CBBAB8", #> "default": true, #> "description": "" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 0, #> "created_at": "2021-04-06T12:33:51Z", #> "updated_at": "2021-04-09T09:41:50Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "body": "Including advice to take this as a string to follow tidyverse conventions. ", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5829", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5829/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5829/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5829/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5829", #> "id": 841141819, #> "node_id": "MDU6SXNzdWU4NDExNDE4MTk=", #> "number": 5829, #> "title": "relocate.data.frame: factor out or make default method ", #> "user": { #> "login": "nealrichardson", #> "id": 2975928, #> "node_id": "MDQ6VXNlcjI5NzU5Mjg=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2975928?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/nealrichardson", #> "html_url": "https://github.com/nealrichardson", #> "followers_url": "https://api.github.com/users/nealrichardson/followers", #> "following_url": "https://api.github.com/users/nealrichardson/following{/other_user}", #> "gists_url": "https://api.github.com/users/nealrichardson/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/nealrichardson/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/nealrichardson/subscriptions", #> "organizations_url": "https://api.github.com/users/nealrichardson/orgs", #> "repos_url": "https://api.github.com/users/nealrichardson/repos", #> "events_url": "https://api.github.com/users/nealrichardson/events{/privacy}", #> "received_events_url": "https://api.github.com/users/nealrichardson/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 17708200, #> "node_id": "MDU6TGFiZWwxNzcwODIwMA==", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/feature", #> "name": "feature", #> "color": "B4C3AE", #> "default": false, #> "description": "a feature request or enhancement" #> }, #> { #> "id": 1726765020, #> "node_id": "MDU6TGFiZWwxNzI2NzY1MDIw", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/selection%20%F0%9F%A7%BA", #> "name": "selection 🧺", #> "color": "eeeeee", #> "default": false, #> "description": "tidyselect, scoped verbs, etc." #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 2, #> "created_at": "2021-03-25T17:14:53Z", #> "updated_at": "2021-04-19T13:22:52Z", #> "closed_at": {}, #> "author_association": "CONTRIBUTOR", #> "active_lock_reason": {}, #> "body": "Looking at [relocate.data.frame](https://github.com/tidyverse/dplyr/blob/614389a391504ee17708aca2cce3d92b123ac449/R/relocate.R#L53-L90) in https://github.com/apache/arrow/pull/9798, it seems that the logic there is pretty generic and does not actually require a data.frame. As long as `.data` has a `dim()` method (for `ncol()` on L81), a `[<-` method (L84, to apply the reordering), and a `names()` method (for `tidyselect::eval_select()`), this function should work. \r\n\r\nIn the short run, it seems to make sense for us to copy and adapt the `relocate.data.frame` method for Arrow objects rather than try to use the (unexported) dplyr data.frame method off-label. But for the future, we were wondering if there was an opportunity to factor this code differently to allow reuse by non-data.frame backends. Ideas that occurred to us:\r\n\r\n* Factor out the core logic and perhaps move to `tidyselect`, as in `vars_relocate` alongside `vars_select` et al. Maybe something like `function(.data, ..., .before = NULL, .after = NULL)` that would return an integer vector of selected/reordered column indices.\r\n* Just rename `relocate.data.frame` to `relocate.default` and then this should just work for any `.data` that has those three methods implemented.\r\n\r\nIf you think this is worthwhile (or see a better alternative), we're happy to submit a PR.\r\n\r\ncc @ianmcook @romainfrancois ", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5823", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5823/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5823/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5823/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5823", #> "id": 838835728, #> "node_id": "MDU6SXNzdWU4Mzg4MzU3Mjg=", #> "number": 5823, #> "title": "Include example of using a data frame in `mutate()`", #> "user": { #> "login": "r2evans", #> "id": 5815808, #> "node_id": "MDQ6VXNlcjU4MTU4MDg=", #> "avatar_url": "https://avatars.githubusercontent.com/u/5815808?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/r2evans", #> "html_url": "https://github.com/r2evans", #> "followers_url": "https://api.github.com/users/r2evans/followers", #> "following_url": "https://api.github.com/users/r2evans/following{/other_user}", #> "gists_url": "https://api.github.com/users/r2evans/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/r2evans/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/r2evans/subscriptions", #> "organizations_url": "https://api.github.com/users/r2evans/orgs", #> "repos_url": "https://api.github.com/users/r2evans/repos", #> "events_url": "https://api.github.com/users/r2evans/events{/privacy}", #> "received_events_url": "https://api.github.com/users/r2evans/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 674867158, #> "node_id": "MDU6TGFiZWw2NzQ4NjcxNTg=", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/documentation", #> "name": "documentation", #> "color": "CBBAB8", #> "default": true, #> "description": "" #> }, #> { #> "id": 1157599134, #> "node_id": "MDU6TGFiZWwxMTU3NTk5MTM0", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/help%20wanted%20:heart:", #> "name": "help wanted :heart:", #> "color": "C5C295", #> "default": false, #> "description": "we'd love your help!" #> }, #> { #> "id": 1157599135, #> "node_id": "MDU6TGFiZWwxMTU3NTk5MTM1", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/tidy-dev-day%20:nerd_face:", #> "name": "tidy-dev-day :nerd_face:", #> "color": "CBBAB8", #> "default": false, #> "description": "Tidyverse Developer Day rstd.io/tidy-dev-day" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 4, #> "created_at": "2021-03-23T15:16:46Z", #> "updated_at": "2021-04-19T13:23:49Z", #> "closed_at": {}, #> "author_association": "CONTRIBUTOR", #> "active_lock_reason": {}, #> "body": "From https://github.com/tidyverse/dplyr/issues/5494#issuecomment-679990205:\r\n\r\n> You can already do that in dplyr, just by returning a data frame:\r\n> \r\n> ```\r\n> library(dplyr, warn.conflicts = FALSE)\r\n> \r\n> df <- data.frame(x = 1, y = 2)\r\n> \r\n> my_f <- function(x) {\r\n> data.frame(x1 = x + 1, x2 = x * 2)\r\n> }\r\n> df %>% mutate(my_f(x))\r\n> #> x y x1 x2\r\n> #> 1 1 2 2 2\r\n> ```\r\n> \r\n> Created on 2020-08-25 by the [reprex package](https://reprex.tidyverse.org) (v0.3.0.9001)\r\n\r\nI'm one of today's [lucky 10,000](https://xkcd.com/1053/). I've been using `dplyr` heavily for many years, and for some reason never knew that it was feasible (even desirable) to use unnamed expressions in `mutate`. I think this is one of the more under-sold capabilities of `mutate` and `summarize`. This was in response to a [SO comment](https://stackoverflow.com/questions/66763386/daily-correlation-in-r/66763782?noredirect=1#comment118019219_66763782).\r\n\r\nI think it's absolutely useful to know that this works:\r\n\r\n```r\r\nmtcars %>%\r\n group_by(cyl) %>%\r\n summarize(as.data.frame(cor.test(disp,hp)[c(\"estimate\",\"p.value\")]))\r\n# # A tibble: 3 x 3\r\n# cyl estimate p.value\r\n# * <dbl> <dbl> <dbl>\r\n# 1 4 0.435 0.182\r\n# 2 6 -0.514 0.238\r\n# 3 8 0.118 0.687\r\n```\r\n\r\nAnd while it might seem obvious to some, I cannot find reference to this method in `?mutate` or any of the package `.Rd` files. (It *is* used in several of the tests.)\r\n\r\nI can provide a PR, is there interest in adding a mention to this in `mutate` and `summarize` help docs?", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5808", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5808/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5808/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5808/events", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5808", #> "id": 827542153, #> "node_id": "MDExOlB1bGxSZXF1ZXN0NTg5NDQyMjM4", #> "number": 5808, #> "title": "use vctrs:::vec_order_locs() in group_by() and vctrs:::vec_order_radix() in arrange()", #> "user": { #> "login": "romainfrancois", #> "id": 2625526, #> "node_id": "MDQ6VXNlcjI2MjU1MjY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2625526?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/romainfrancois", #> "html_url": "https://github.com/romainfrancois", #> "followers_url": "https://api.github.com/users/romainfrancois/followers", #> "following_url": "https://api.github.com/users/romainfrancois/following{/other_user}", #> "gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 6, #> "created_at": "2021-03-10T10:59:26Z", #> "updated_at": "2021-04-29T12:02:31Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "pull_request": { #> "url": "https://api.github.com/repos/tidyverse/dplyr/pulls/5808", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5808", #> "diff_url": "https://github.com/tidyverse/dplyr/pull/5808.diff", #> "patch_url": "https://github.com/tidyverse/dplyr/pull/5808.patch" #> }, #> "body": "closes #4406\r\n\r\n``` r\r\nset.seed(42)\r\nlibrary(dplyr)\r\nlibrary(tibble)\r\nx <- runif(1e7)\r\ngrp <- sample(1e6, 1e7, replace=TRUE)\r\ntib <- tibble(grp, x)\r\n\r\nbench::mark(\r\n tib %>% group_by(grp), \r\n)\r\n#> Warning: Some expressions had a GC in every iteration; so filtering is disabled.\r\n#> # A tibble: 1 x 6\r\n#> expression min median `itr/sec` mem_alloc `gc/sec`\r\n#> <bch:expr> <bch:tm> <bch:tm> <dbl> <bch:byt> <dbl>\r\n#> 1 tib %>% group_by(grp) 627ms 627ms 1.60 228MB 4.79\r\n```\r\n\r\nvs on master: \r\n\r\n``` r\r\nset.seed(42)\r\nlibrary(dplyr)\r\nlibrary(tibble)\r\nx <- runif(1e7)\r\ngrp <- sample(1e6, 1e7, replace=TRUE)\r\ntib <- tibble(grp, x)\r\n\r\nbench::mark(\r\n not_ordered = tib %>% group_by(grp), \r\n ordered = {\r\n o <- order(grp)\r\n tibo <- tibble(grp=grp[o], x=x[o])\r\n b <- tibo %>% group_by(grp)\r\n }, \r\n check = FALSE\r\n)\r\n#> Warning: Some expressions had a GC in every iteration; so filtering is disabled.\r\n#> # A tibble: 2 x 6\r\n#> expression min median `itr/sec` mem_alloc `gc/sec`\r\n#> <bch:expr> <bch:tm> <bch:tm> <dbl> <bch:byt> <dbl>\r\n#> 1 not_ordered 2.64s 2.64s 0.379 248MB 1.14\r\n#> 2 ordered 1.33s 1.33s 0.752 400MB 1.50\r\n```\r\n\r\n<sup>Created on 2021-03-10 by the [reprex package](https://reprex.tidyverse.org) (v0.3.0)<\/sup>", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5785", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5785/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5785/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5785/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5785", #> "id": 816054299, #> "node_id": "MDU6SXNzdWU4MTYwNTQyOTk=", #> "number": 5785, #> "title": "Should the across help file also cater to the 'apply to dataframe` use case?", #> "user": { #> "login": "MilesMcBain", #> "id": 9996346, #> "node_id": "MDQ6VXNlcjk5OTYzNDY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/9996346?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/MilesMcBain", #> "html_url": "https://github.com/MilesMcBain", #> "followers_url": "https://api.github.com/users/MilesMcBain/followers", #> "following_url": "https://api.github.com/users/MilesMcBain/following{/other_user}", #> "gists_url": "https://api.github.com/users/MilesMcBain/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/MilesMcBain/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/MilesMcBain/subscriptions", #> "organizations_url": "https://api.github.com/users/MilesMcBain/orgs", #> "repos_url": "https://api.github.com/users/MilesMcBain/repos", #> "events_url": "https://api.github.com/users/MilesMcBain/events{/privacy}", #> "received_events_url": "https://api.github.com/users/MilesMcBain/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 674867158, #> "node_id": "MDU6TGFiZWw2NzQ4NjcxNTg=", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/documentation", #> "name": "documentation", #> "color": "CBBAB8", #> "default": true, #> "description": "" #> }, #> { #> "id": 1157599135, #> "node_id": "MDU6TGFiZWwxMTU3NTk5MTM1", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/tidy-dev-day%20:nerd_face:", #> "name": "tidy-dev-day :nerd_face:", #> "color": "CBBAB8", #> "default": false, #> "description": "Tidyverse Developer Day rstd.io/tidy-dev-day" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 2, #> "created_at": "2021-02-25T03:42:06Z", #> "updated_at": "2021-03-04T08:41:31Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "I had difficulty with compactly expressing a mutate that wanted the result column to be a function of several input columns, to be selected via tidy select.\r\n\r\nEventually @jennybc linked me to: https://dplyr.tidyverse.org/articles/rowwise.html#row-wise-summary-functions\r\n\r\nWhich demonstrated I can do something fairly clean like this:\r\n\r\n```r\r\ncol_prod2 <- function(.df) {\r\n .df %>%\r\n reduce(.f = `*`)\r\n }\r\n\r\nrisk_matrix %>%\r\n mutate(interest_level = col_prod2(across(ends_with(\"level\"))))\r\n```\r\n\r\n`across` was the first thing I looked at, but the help file is geared entirely to the `apply to each column` usecase, which was enough to convince me to stop investigating it. Maybe the help file should contain an example from the linked vignette?", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5711", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5711/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5711/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5711/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5711", #> "id": 795421720, #> "node_id": "MDU6SXNzdWU3OTU0MjE3MjA=", #> "number": 5711, #> "title": "Unexpected behavior in na_if ", #> "user": { #> "login": "hjohns12", #> "id": 23141035, #> "node_id": "MDQ6VXNlcjIzMTQxMDM1", #> "avatar_url": "https://avatars.githubusercontent.com/u/23141035?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/hjohns12", #> "html_url": "https://github.com/hjohns12", #> "followers_url": "https://api.github.com/users/hjohns12/followers", #> "following_url": "https://api.github.com/users/hjohns12/following{/other_user}", #> "gists_url": "https://api.github.com/users/hjohns12/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/hjohns12/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/hjohns12/subscriptions", #> "organizations_url": "https://api.github.com/users/hjohns12/orgs", #> "repos_url": "https://api.github.com/users/hjohns12/repos", #> "events_url": "https://api.github.com/users/hjohns12/events{/privacy}", #> "received_events_url": "https://api.github.com/users/hjohns12/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 1726774808, #> "node_id": "MDU6TGFiZWwxNzI2Nzc0ODA4", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/funs%20:laughing:", #> "name": "funs :laughing:", #> "color": "eeeeee", #> "default": false, #> "description": "" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 1, #> "created_at": "2021-01-27T20:30:42Z", #> "updated_at": "2021-01-28T11:22:02Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "Tried using `na_if` today to turn values in a column that are less than zero to NA. Tried the `ifelse` alternative and that gave the behavior I expected to see when using `na_if`. \r\n\r\n---\r\n\r\n```r\r\ntest <- tibble(Staff.Confirmed = c(0, 1, -999), Residents.Confirmed = c(12, -192, 0))\r\nprint(test)\r\n\r\nout <- test %>% \r\n mutate(staff_conf_naif = na_if(Staff.Confirmed, Staff.Confirmed < 0),\r\n staff_conf_ifelse = ifelse(Staff.Confirmed < 0, NA, Staff.Confirmed),\r\n res_conf_naif = na_if(Residents.Confirmed, Residents.Confirmed < 0),\r\n res_conf_ifelse = ifelse(Residents.Confirmed < 0, NA, Residents.Confirmed)) %>% \r\n select(Staff.Confirmed, staff_conf_naif, staff_conf_ifelse,\r\n Residents.Confirmed, res_conf_naif, res_conf_ifelse)\r\nprint(out)\r\n```\r\n\r\nWhen I use `na_if` in this mutate, it only makes changes to values equal to zero in the column referenced. Not sure if this is the intended behavior, but it seems a bit strange", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5700", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5700/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5700/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5700/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5700", #> "id": 790293697, #> "node_id": "MDU6SXNzdWU3OTAyOTM2OTc=", #> "number": 5700, #> "title": "Multi-join suffixes", #> "user": { #> "login": "eggrandio", #> "id": 49569940, #> "node_id": "MDQ6VXNlcjQ5NTY5OTQw", #> "avatar_url": "https://avatars.githubusercontent.com/u/49569940?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/eggrandio", #> "html_url": "https://github.com/eggrandio", #> "followers_url": "https://api.github.com/users/eggrandio/followers", #> "following_url": "https://api.github.com/users/eggrandio/following{/other_user}", #> "gists_url": "https://api.github.com/users/eggrandio/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/eggrandio/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/eggrandio/subscriptions", #> "organizations_url": "https://api.github.com/users/eggrandio/orgs", #> "repos_url": "https://api.github.com/users/eggrandio/repos", #> "events_url": "https://api.github.com/users/eggrandio/events{/privacy}", #> "received_events_url": "https://api.github.com/users/eggrandio/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 17708200, #> "node_id": "MDU6TGFiZWwxNzcwODIwMA==", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/feature", #> "name": "feature", #> "color": "B4C3AE", #> "default": false, #> "description": "a feature request or enhancement" #> }, #> { #> "id": 1257707950, #> "node_id": "MDU6TGFiZWwxMjU3NzA3OTUw", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/join%20:twisted_rightwards_arrows:", #> "name": "join :twisted_rightwards_arrows:", #> "color": "eeeeee", #> "default": false, #> "description": "Related to joins" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 2, #> "created_at": "2021-01-20T20:21:45Z", #> "updated_at": "2021-04-29T15:49:01Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "Hi,\r\n\r\nI want to merge several data.frames with some common columns and append a suffix to the column names to keep track from where does the data for each column come from. \r\n\r\nI can do it easily with the suffix term in the first full_join, but when I do the second join, no suffixes are added. I can rename the third data.frame so it has suffixes, but I wanted to know if there is another way of doing it using the suffix term.\r\n\r\nHere is an example code:\r\n```\r\nx = data.frame(col1 = c(\"a\",\"b\",\"c\"), col2 = 1:3, col3 = 1:3)\r\ny = data.frame(col1 = c(\"b\",\"c\",\"d\"), col2 = 4:6, col3 = 1:3)\r\nz = data.frame(col1 = c(\"c\",\"d\",\"a\"), col2 = 7:9, col3 = 1:3)\r\n\r\n> df = full_join(x, y, by = \"col1\", suffix = c(\"_x\",\"_y\")) %>% \r\n full_join(z, by = \"col1\", suffix = c(\"\",\"_z\")) \r\n\r\n> df\r\n col1 col2_x col3_x col2_y col3_y col2 col3\r\n1 a 1 1 NA NA 9 3\r\n2 b 2 2 4 1 NA NA\r\n3 c 3 3 5 2 7 1\r\n4 d NA NA 6 3 8 2\r\n```\r\nI was expecting that col2 and col3 from data.frame z would have a \"_z\" suffix. I have tried using empty suffixes while merging two data.frames and it works.\r\n\r\nI can work around by renaming the columns in z before doing the second full_join, but in my real data I have several common columns, and if I wanted to merge more data.frames it would complicate the code. This is my expected output.\r\n\r\n```\r\n> colnames(z) = paste0(colnames(z),\"_z\")\r\n\r\n> df = full_join(x, y, by = \"col1\", suffix = c(\"_x\",\"_y\")) %>% \r\n full_join(z, by = c(\"col1\"=\"col1_z\"))\r\n\r\n> df\r\n col1 col2_x col3_x col2_y col3_y col2_z col3_z\r\n1 a 1 1 NA NA 9 3\r\n2 b 2 2 4 1 NA NA\r\n3 c 3 3 5 2 7 1\r\n4 d NA NA 6 3 8 2\r\n```\r\n\r\nI have seen other [similar problems][1] in which adding an extra column to keep track of the source data.frame is used, but I was wondering why does not the suffix term work with multiple joins.\r\n\r\nPS: If I keep the first suffix empty, I can add suffixes in the second join, but that will leave the col2 and col3 form x without suffix.\r\n\r\n```\r\n> df = full_join(x, y, by = \"col1\", suffix = c(\"\",\"_y\")) %>% \r\n full_join(z, by = \"col1\", suffix = c(\"\",\"_z\"))\r\n\r\n> df\r\n col1 col2 col3 col2_y col3_y col2_z col3_z\r\n1 a 1 1 NA NA 9 3\r\n2 b 2 2 4 1 NA NA\r\n3 c 3 3 5 2 7 1\r\n4 d NA NA 6 3 8 2\r\n```\r\n\r\nI might be missing why this is not working the way I expected, but in principle it should be very simple to add a suffix to the \"newly added\" columns.\r\n\r\nThanks!\r\n\r\n [1]: https://stackoverflow.com/questions/65152352/suffixes-when-merging-more-than-two-data-frames-with-full-join", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5699", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5699/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5699/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5699/events", #> "html_url": "https://github.com/tidyverse/dplyr/issues/5699", #> "id": 790239328, #> "node_id": "MDU6SXNzdWU3OTAyMzkzMjg=", #> "number": 5699, #> "title": "`rows_patch(x, y, ...)` shows unhelpful error message when `nrow(y) > nrow(x)`", #> "user": { #> "login": "everetr", #> "id": 9023041, #> "node_id": "MDQ6VXNlcjkwMjMwNDE=", #> "avatar_url": "https://avatars.githubusercontent.com/u/9023041?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/everetr", #> "html_url": "https://github.com/everetr", #> "followers_url": "https://api.github.com/users/everetr/followers", #> "following_url": "https://api.github.com/users/everetr/following{/other_user}", #> "gists_url": "https://api.github.com/users/everetr/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/everetr/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/everetr/subscriptions", #> "organizations_url": "https://api.github.com/users/everetr/orgs", #> "repos_url": "https://api.github.com/users/everetr/repos", #> "events_url": "https://api.github.com/users/everetr/events{/privacy}", #> "received_events_url": "https://api.github.com/users/everetr/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [ #> { #> "id": 17708198, #> "node_id": "MDU6TGFiZWwxNzcwODE5OA==", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/bug", #> "name": "bug", #> "color": "E0B3A2", #> "default": true, #> "description": "an unexpected problem or unintended behavior" #> }, #> { #> "id": 1257707950, #> "node_id": "MDU6TGFiZWwxMjU3NzA3OTUw", #> "url": "https://api.github.com/repos/tidyverse/dplyr/labels/join%20:twisted_rightwards_arrows:", #> "name": "join :twisted_rightwards_arrows:", #> "color": "eeeeee", #> "default": false, #> "description": "Related to joins" #> } #> ], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 0, #> "created_at": "2021-01-20T19:06:49Z", #> "updated_at": "2021-04-19T13:47:23Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "When I try to patch a data frame (`x` in the below example) using another data frame with more rows (`y`), an error is thrown with an unhelpful message. It took some time to figure out that the row number difference was the source of the error. `rlang::last_error()` and `rlang::last_trace()` didn't help.\r\n\r\nIs there any reason a data frame *should not* be patched by a data frame with more rows? I could be missing some theory here. If there *is* a good reason why this should not be allowed, can I add that to the documentation for `rows_patch()` and friends?\r\n\r\nExample:\r\n\r\n``` r\r\nsuppressPackageStartupMessages(library(dplyr))\r\n\r\nx = data.frame(id = c(1, 2, 3), foo = c(\"a\", \"b\", NA))\r\ny = data.frame(id = c(1, 3, 5, 7), foo = c(\"a\", \"c\", \"e\", \"g\"))\r\ndplyr::rows_patch(x, y, by = \"id\")\r\n#> Error: Attempting to patch missing rows.\r\n```\r\n\r\n<sup>Created on 2021-01-20 by the [reprex package](https://reprex.tidyverse.org) (v0.3.0)<\/sup>\r\n<details>\r\n<summary>\r\nSession info\r\n<\/summary>\r\n\r\n``` r\r\nsessionInfo()\r\n#> R version 4.0.3 (2020-10-10)\r\n#> Platform: x86_64-w64-mingw32/x64 (64-bit)\r\n#> Running under: Windows 10 x64 (build 19041)\r\n#> \r\n#> Matrix products: default\r\n#> \r\n#> locale:\r\n#> [1] LC_COLLATE=English_United States.1252 \r\n#> [2] LC_CTYPE=English_United States.1252 \r\n#> [3] LC_MONETARY=English_United States.1252\r\n#> [4] LC_NUMERIC=C \r\n#> [5] LC_TIME=English_United States.1252 \r\n#> \r\n#> attached base packages:\r\n#> [1] stats graphics grDevices utils datasets methods base \r\n#> \r\n#> other attached packages:\r\n#> [1] dplyr_1.0.3\r\n#> \r\n#> loaded via a namespace (and not attached):\r\n#> [1] knitr_1.30 magrittr_2.0.1 tidyselect_1.1.0 R6_2.5.0 \r\n#> [5] rlang_0.4.10 stringr_1.4.0 highr_0.8 tools_4.0.3 \r\n#> [9] xfun_0.20 DBI_1.1.1 htmltools_0.5.1 ellipsis_0.3.1 \r\n#> [13] yaml_2.2.1 digest_0.6.27 assertthat_0.2.1 tibble_3.0.5 \r\n#> [17] lifecycle_0.2.0 crayon_1.3.4 purrr_0.3.4 vctrs_0.3.6 \r\n#> [21] glue_1.4.2 evaluate_0.14 rmarkdown_2.6 stringi_1.5.3 \r\n#> [25] compiler_4.0.3 pillar_1.4.7 generics_0.1.0 pkgconfig_2.0.3\r\n```\r\n\r\n<\/details>\r\n\r\nExpected output:\r\n\r\n``` r\r\ndata.frame(id = c(1, 2, 3), foo = c(\"a\", \"b\", \"c\"))\r\n#> id foo\r\n#> 1 1 a\r\n#> 2 2 b\r\n#> 3 3 c\r\n```\r\n", #> "performed_via_github_app": {} #> }, #> { #> "url": 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"locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 2, #> "created_at": "2020-12-17T13:56:24Z", #> "updated_at": "2021-01-11T16:08:07Z", #> "closed_at": {}, #> "author_association": "NONE", #> "active_lock_reason": {}, #> "body": "As @lionel- nicely proposed in #3967 it would be great to have more control on what the `*_join()` functions do on duplicated or unmatched rows. Proposed arguments:\r\n\r\n* `.unmatched = c(\"keep\", \"drop\", \"error\")`\r\n* `.duplicates = c(\"error\", \"product\")`\r\n\r\nfor example a 1:1 join would then simply be `.unmatched = \"error\"` and `.duplicates = \"error\"`.\r\n\r\nAs the arguments should rather be added to the existing `*_join()` functions the \"keep\" and \"drop\" options for `.unmatched` don't really make sense for all joins. Rather, one would have\r\n\r\n`left/right/full_join()` -> `.unmatched = c(\"keep\", \"error\")`\r\n`inner_join()` -> `.unmatched = c(\"drop\", \"error\")`", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5638", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5638/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5638/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5638/events", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5638", #> "id": 757018663, #> "node_id": "MDExOlB1bGxSZXF1ZXN0NTMyNDYzODE5", #> "number": 5638, #> "title": "bundle() function for contiguous grouping", #> "user": { #> "login": "romainfrancois", #> "id": 2625526, #> "node_id": "MDQ6VXNlcjI2MjU1MjY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2625526?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/romainfrancois", #> "html_url": "https://github.com/romainfrancois", #> "followers_url": "https://api.github.com/users/romainfrancois/followers", #> "following_url": "https://api.github.com/users/romainfrancois/following{/other_user}", #> "gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 4, #> "created_at": "2020-12-04T11:11:27Z", #> "updated_at": "2020-12-07T15:11:22Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "pull_request": { #> "url": "https://api.github.com/repos/tidyverse/dplyr/pulls/5638", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5638", #> "diff_url": "https://github.com/tidyverse/dplyr/pull/5638.diff", #> "patch_url": "https://github.com/tidyverse/dplyr/pull/5638.patch" #> }, #> "body": "This has been discussed many times, incl #5184 and dplyr went back and forth about what `group_by()` does. \r\n\r\nCurrently`group_by()` does not reorder rows, it only adds extra information so that further operations are done \"by groups\". This is considered a feature and it probably can't change. One of the nice properties is that if we group `tbl` then ungroup it, we end up with the same data. \r\n\r\nOTOH, having data bundled by group (because \"grouped by group\" is awkward) also has nice properties. In terms of performance, having all data for a single group \"together\" will improve locality, and with a little altrep where applicable, it could also be more memory efficient. \r\n\r\nTo kickstart the experiment, here is `bundle()` a function that takes a grouped data frame and returns a grouped data frame that has the property of having its data contiguous: \r\n\r\n``` r\r\nlibrary(dplyr, warn.conflicts = FALSE)\r\n\r\ndf <- data.frame(g = rep(1:2, 3), x = 1:6)\r\ndf %>% group_by(g)\r\n#> # A tibble: 6 x 2\r\n#> # Groups: g [2]\r\n#> g x\r\n#> <int> <int>\r\n#> 1 1 1\r\n#> 2 2 2\r\n#> 3 1 3\r\n#> 4 2 4\r\n#> 5 1 5\r\n#> 6 2 6\r\ndf %>% group_by(g) %>% bundle()\r\n#> # A tibble: 6 x 2\r\n#> # Groups: g [2]\r\n#> g x\r\n#> <int> <int>\r\n#> 1 1 1\r\n#> 2 1 3\r\n#> 3 1 5\r\n#> 4 2 2\r\n#> 5 2 4\r\n#> 6 2 6\r\n```\r\n\r\n<sup>Created on 2020-12-04 by the [reprex package](https://reprex.tidyverse.org) (v0.3.0.9001)<\/sup>\r\n\r\nWe could imagine a `bundle_by()` shortcut, initially simply implemented as: `bundle_by <- function(.data, ...) bundle(group_by(.data, ...))`, but that perhaps could be internally done differently. \r\n\r\nThis is an initial version, and some of the code should probably be internalized, i.e. this feels like something better suited for C++: \r\n\r\n```r\r\nbreaks <- cumsum(c(1L, list_sizes(old_rows)))\r\n start <- breaks[-length(breaks)]\r\n end <- breaks[-1] - 1L\r\n new_groups$.rows <- new_list_of(\r\n map2(start, end, seq2),\r\n ptype = integer(),\r\n class = \"bundled_indices\"\r\n )\r\n```\r\n\r\n`bundle()` creates a grouped data frame that is entirely compatible with all operations. It only adds: \r\n\r\n - the `\"bundled_df\"` class in addition to `\"grouped_df\"` \r\n - the `\"bundled_indices\"` class marks the `.rows` columns of the `groups` attribute. \r\n\r\nThe idea being that `vec_chop()` (used in `DataMask` internal code to create the promises for each of the columns) could recognize `\"bundled_indices\"` and use it, i.e. for the columns where altrep is possible, it could create a list of views instead of a list of materialized vectors. views would only need to store the original vector, start and end positions (the altrep implies could very easily implement `DATAPTR()`). \r\n\r\nFor now, we can expect the cost of `bundle()` to be dominated by `vec_slice(.data, indices)` but then again maybe that can be made lazy with altrep too, so that we would not pay for slicing a column that we later not use. \r\n\r\n@DavisVaughan @lionel- can you see a `vec_chop(x, <bundled_indices>) -> list of views of x` ?\r\n\r\n\"bundling\" could also be an argument of `group_by()` but it feels less of an active choice from the user ?\r\n\r\n`summarise()` already conceptually makes bundled data frames, they could be marked as such. ", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5617", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5617/labels{/name}", #> "comments_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5617/comments", #> "events_url": "https://api.github.com/repos/tidyverse/dplyr/issues/5617/events", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5617", #> "id": 747351361, #> "node_id": "MDExOlB1bGxSZXF1ZXN0NTI0NTg4OTk1", #> "number": 5617, #> "title": "rethrow shiny errors as is, instead of promoting them like other errors.", #> "user": { #> "login": "romainfrancois", #> "id": 2625526, #> "node_id": "MDQ6VXNlcjI2MjU1MjY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2625526?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/romainfrancois", #> "html_url": "https://github.com/romainfrancois", #> "followers_url": "https://api.github.com/users/romainfrancois/followers", #> "following_url": "https://api.github.com/users/romainfrancois/following{/other_user}", #> "gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 1, #> "created_at": "2020-11-20T09:58:15Z", #> "updated_at": "2020-11-20T16:00:52Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "pull_request": { #> "url": "https://api.github.com/repos/tidyverse/dplyr/pulls/5617", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5617", #> "diff_url": "https://github.com/tidyverse/dplyr/pull/5617.diff", #> "patch_url": "https://github.com/tidyverse/dplyr/pull/5617.patch" #> }, #> "body": "closes #5552\r\n\r\nBecause we catch and improve errors in all `dplyr` verbs, some `shiny` errors don't interrupt the flow the way they are expected to. \r\n\r\nNot sure this is the only error we should consider. cc @wch\r\n\r\nAlternatively, we could re-add the `shiny.silent.error` class to the error we create. \r\n\r\nMore generally, should we do something to preserve the class and/or other parts of the errors we rebrand ?", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5588", #> "repository_url": 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"gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> }, #> "labels": [], #> "state": "open", #> "locked": false, #> "assignee": {}, #> "assignees": [], #> "milestone": {}, #> "comments": 5, #> "created_at": "2020-11-04T17:20:40Z", #> "updated_at": "2021-05-12T20:58:20Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "pull_request": { #> "url": "https://api.github.com/repos/tidyverse/dplyr/pulls/5588", #> "html_url": "https://github.com/tidyverse/dplyr/pull/5588", #> "diff_url": "https://github.com/tidyverse/dplyr/pull/5588.diff", #> "patch_url": "https://github.com/tidyverse/dplyr/pull/5588.patch" #> }, #> "body": "I need to review the other functions, and understand better what they all do, but I think this is legit for #5553\r\n\r\n``` r\r\nlibrary(dplyr)\r\n\r\ndf1 <- tibble(x = c(1, 1, 2), y = c(2, 3, 5))\r\ndf2 <- tibble(x = 1, y = 4)\r\nrows_update(df1, df2, by = \"x\")\r\n#> # A tibble: 3 x 2\r\n#> x y\r\n#> <dbl> <dbl>\r\n#> 1 1 4\r\n#> 2 1 4\r\n#> 3 2 5\r\n```\r\n\r\n<sup>Created on 2020-11-04 by the [reprex package](https://reprex.tidyverse.org) (v0.3.0.9001)<\/sup>", #> "performed_via_github_app": {} #> }, #> { #> "url": "https://api.github.com/repos/tidyverse/dplyr/issues/5573", #> "repository_url": "https://api.github.com/repos/tidyverse/dplyr", #> "labels_url": 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", #> "creator": { #> "login": "romainfrancois", #> "id": 2625526, #> "node_id": "MDQ6VXNlcjI2MjU1MjY=", #> "avatar_url": "https://avatars.githubusercontent.com/u/2625526?v=4", #> "gravatar_id": "", #> "url": "https://api.github.com/users/romainfrancois", #> "html_url": "https://github.com/romainfrancois", #> "followers_url": "https://api.github.com/users/romainfrancois/followers", #> "following_url": "https://api.github.com/users/romainfrancois/following{/other_user}", #> "gists_url": "https://api.github.com/users/romainfrancois/gists{/gist_id}", #> "starred_url": "https://api.github.com/users/romainfrancois/starred{/owner}{/repo}", #> "subscriptions_url": "https://api.github.com/users/romainfrancois/subscriptions", #> "organizations_url": "https://api.github.com/users/romainfrancois/orgs", #> "repos_url": "https://api.github.com/users/romainfrancois/repos", #> "events_url": "https://api.github.com/users/romainfrancois/events{/privacy}", #> "received_events_url": "https://api.github.com/users/romainfrancois/received_events", #> "type": "User", #> "site_admin": false #> }, #> "open_issues": 9, #> "closed_issues": 4, #> "state": "open", #> "created_at": "2020-03-22T09:33:34Z", #> "updated_at": "2021-04-09T08:45:16Z", #> "due_on": {}, #> "closed_at": {} #> }, #> "comments": 4, #> "created_at": "2020-10-26T16:51:26Z", #> "updated_at": "2020-11-16T18:05:24Z", #> "closed_at": {}, #> "author_association": "MEMBER", #> "active_lock_reason": {}, #> "body": "They shouldn't be needed anymore, and they make the error messages unnecessarily confusing. 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