Import model estimates from a NONMEM ext file

Import model estimates from a NONMEM ext file

nmext(
  run = NA_real_,
  project = getwd(),
  file = paste0(run, ".ext"),
  path = NULL,
  root = c("working", "cppfile"),
  index = "last",
  theta = TRUE,
  omega = TRUE,
  sigma = TRUE,
  olabels = NULL,
  slabels = NULL,
  oprefix = "",
  sprefix = "",
  tname = "THETA",
  oname = "...",
  sname = "...",
  read_fun = "data.table",
  env = NULL
)

Arguments

run	run number
project	project directory
file	deprecated; use path instead
path	full path to NONMEM ext file
root	the directory that `path` and `project` are relative to; this is currently limited to the `working` directory or `cppdir`, the directory where the model file is located
index	the estimation number to return; "last" will return the last estimation results; otherwise, pass an integer indicating which estimation results to return
theta	logical; if TRUE, the $THETA vector is returned
omega	logical; if TRUE, the $OMEGA matrix is returned
sigma	logical; if TRUE, the $SIGMA matrix is returned
olabels	labels for $OMEGA
slabels	labels for $SIGMA
oprefix	prefix for $OMEGA labels
sprefix	prefix for $SIGMA labels
tname	name for $THETA
oname	name for $OMEGA
sname	name for $SIGMA
read_fun	function to use when reading the ext file
env	internal

See also

nmxml, read_nmext