Import model estimates from a NONMEM ext file

Import model estimates from a NONMEM ext file

nmext(
  run = NA_real_,
  project = getwd(),
  file = paste0(run, ".ext"),
  path = NULL,
  root = c("working", "cppfile"),
  index = "last",
  theta = TRUE,
  omega = TRUE,
  sigma = TRUE,
  olabels = NULL,
  slabels = NULL,
  oprefix = "",
  sprefix = "",
  tname = "THETA",
  oname = "...",
  sname = "...",
  read_fun = "data.table",
  env = NULL
)

Arguments

run

run number

project

project directory

file

deprecated; use path instead

path

full path to NONMEM ext file

root

the directory that `path` and `project` are relative to; this is currently limited to the `working` directory or `cppdir`, the directory where the model file is located

index

the estimation number to return; "last" will return the last estimation results; otherwise, pass an integer indicating which estimation results to return

theta

logical; if TRUE, the $THETA vector is returned

omega

logical; if TRUE, the $OMEGA matrix is returned

sigma

logical; if TRUE, the $SIGMA matrix is returned

olabels

labels for $OMEGA

slabels

labels for $SIGMA

oprefix

prefix for $OMEGA labels

sprefix

prefix for $SIGMA labels

tname

name for $THETA

oname

name for $OMEGA

sname

name for $SIGMA

read_fun

function to use when reading the ext file

env

internal

See also

nmxml(), read_nmext()