Coerce a model object to list
# S4 method for mrgmod
as.list(x, deep = FALSE, ...)mrgmod object
if TRUE, extra information is returned
(see details).
not used
If deep is TRUE, then the values for
trans,advan, and mindt are
returned as well as a summary of internal model
functions (with a call to mrgsolve:::funset).
npar: number of parameters
neq: number of compartments or differential equations
pars: names of model parameters
covariates: names of parameters identified as covariates
cmt: names of model compartments
param: the parameter list
init: initial condition list
omega: $OMEGA matrices, as a matlist object
sigma: $SIGMA matrices, as a matlist object
fixed: named list of $FIXED values
model: model name
project: model project directory
soloc: directory where the model is being built
sodll: complete path to the model shared object
cfile: path for the model source code file
shlib: list of compilation information
start: simulation start time
end: simulation end time
delta: simulation time step
add: additional simulation times
capture: names of captured data items
request: compartments requested upon simulation
cmti: named indices for current output compartments
capturei: named indices for current output capture
random: names and labels of $OMEGA and $SIGMA
code: model source code from cfile
details: model details data frame
nm_import: a character vector listing the names of nonmem output files
that were read to import estimates from a completed nonmem run
cpp_variables: a data frame listing variables internal to the model
cpp file
atol: see solversettings
rtol: see solversettings
ss_atol: absolute tolerance to use when advancing to PK steady state
ss_rtol: relative tolerance to use when advancing to PK steady state
maxsteps: see solversettings
hmin: see solversettings
hmax: see solversettings
envir: the model environment
plugins: plugins invoked in the model
digits: number of digits to request in simulated data
tscale: multiplicative scalar for time in results only
mindt: simulation output time below which there model will assume to
have not advanced
preclean: logical indicating to clean up compilation artifacts prior
to compiling
debug: print debugging information during simulation run
verbose: print extra information during setup for model run