Internal Column Lookup Database

2022-05-19

This is an internal column definition data base that can be used for lookup without referencing a lookup file in the header.

This file is located in inst/internal/ysdb_internal.yml.

CONTENTS

SETUP__:
  description: yspec internal column database
C: 
  short: comment character
  values: [".", "C"]
  decode: [analysis row, commented row]
  type: character
ID: 
  short: subject identifier
  type: numeric
USUBJID:
  short: unique subject identifier
  type: character
SUBJ:
  short: subject identifier
  type: character
STUDYID:
  short: study identifier
  type: character
CMT:
  short: compartment number
  type: numeric
EVID:
  short: event ID
  values: {observation: 0, dose: 1}
AMT: 
  short: dose amount
  type: numeric
RATE: 
  short: infusion rate
  type: numeric
II: 
  short: inter-dose interval
  type: numeric
SS: 
  short: steady state indicator
  values: [0,1]
  decode:
    - non-steady state indicator
    - steady state indicator
MDV:
  values: {non-missing: 0, missing: 1}
  type: numeric
  long: missing DV indicator
  comment: per NONMEM specifications
DV: 
  short: dependent variable
  type: numeric
WT:
  short: weight
  unit: kg
  type: numeric
EGFR:
  short: eGFR
  long: estimated glomerular filtration rate
  unit: ml/min/1.73m2
BMI:
  long: body mass index
  unit: m2/kg
  type: numeric
HT:
  about: [height, cm]
  long: Height
  type: numeric
ALB:
  long: serum albumin
  unit: g/dL
  short: albumin
  type: numeric
AGE:
  about: [age,years]
  type: numeric
SEX: 
  values: {male: 0, female: 1}
NUM: 
  short: record number
  type: numeric
BQL: 
  short: "data point below the LOQ"
  type: numeric
  values: {0: not below quantitation limit, 1: below quantitation limit}
LOQ: 
  short: assay limit of quantification
  type: numeric