Load a data specification file
ys_load(file, verbose = FALSE, ...)
ys_load_file(file, data_path = NULL, data_stem = NULL, verbose = FALSE, ...)
load_spec(...)Name of yaml file containing specification.
Logical: print information to the console as the file is processed.
Other arguments to update SETUP__.
Optional path to data sets.
Optional alternate stem for data files.
sp <- ys_load(ys_help$file())
sp
#> name info unit short source
#> C cd- . comment character ysdb_internal
#> NUM --- . record number ysdb_internal
#> ID --- . subject identifier ysdb_internal
#> SUBJ c-- . subject identifier ysdb_internal
#> TIME --- hour TIME look
#> SEQ -d- . SEQ .
#> CMT --- . compartment number ysdb_internal
#> EVID -d- . event ID ysdb_internal
#> AMT --- mg dose amount ysdb_internal
#> DV --- micrograms/L dependent variable ysdb_internal
#> AGE --- years age ysdb_internal
#> WT --- kg weight ysdb_internal
#> CRCL --- ml/min CRCL .
#> ALB --- g/dL albumin ysdb_internal
#> BMI --- m2/kg BMI ysdb_internal
#> AAG --- mg/dL alpha-1-acid glycoprotein .
#> SCR --- mg/dL serum creatinine .
#> AST --- . aspartate aminotransferase .
#> ALT --- . alanine aminotransferase .
#> HT --- cm height ysdb_internal
#> CP -d- . Child-Pugh score look
#> TAFD --- hours time after first dose .
#> TAD --- hours time after dose .
#> LDOS --- mg last dose amount .
#> MDV -d- . MDV ysdb_internal
#> BLQ -d- . below limit of quantification .
#> PHASE --- . study phase indicator .
#> STUDY -d- . study number .
#> RF cd- . renal function stage .
sp <- ys_load(ys_help$file(), verbose = TRUE)
#> ~ working on ... analysis1.yml
#> description ... Example PopPK analysis data set
#> sponsor ... example-project
#> lookup file ... look.yml
#> lookup file ... ysdb_internal.yml
#> ~ working on ... ysdb_internal.yml
#> description ... yspec internal column database
#> ~ working on ... look.yml
#> description ... [data set description]
#> ::::::::::::: ... ::::::::::::::::::::::::::::::
#> ~ looking up ... ysdb_internal.yml ---> C
#> ~ looking up ... ysdb_internal.yml ---> NUM
#> ~ looking up ... ysdb_internal.yml ---> ID
#> ~ looking up ... ysdb_internal.yml ---> SUBJ
#> ~ looking up ... look.yml ---> TIME
#> ~ looking up ... ysdb_internal.yml ---> CMT
#> ~ looking up ... ysdb_internal.yml ---> EVID
#> ~ looking up ... ysdb_internal.yml ---> AMT
#> ~ looking up ... ysdb_internal.yml ---> DV
#> ~ looking up ... ysdb_internal.yml ---> AGE
#> ~ looking up ... ysdb_internal.yml ---> WT
#> ~ looking up ... ysdb_internal.yml ---> ALB
#> ~ looking up ... ysdb_internal.yml ---> BMI
#> ~ looking up ... ysdb_internal.yml ---> HT
#> ~ looking up ... look.yml ---> CP
#> ~ looking up ... ysdb_internal.yml ---> MDV